| 2025 | CPM | Representing Paths in Digraphs. | Riccardo Dondi, Alexandru Popa |
| 2025 | TIME | Heuristics for Covering the Timeline in Temporal Graphs. | Riccardo Dondi, Rares-Ioan Mateiu, Alexandru Popa |
| 2025 | WADS | Novel Complexity Results for Temporal Separators with Deadlines. | Riccardo Dondi, Manuel Lafond |
| 2024 | IC3K | A Network Learning Method for Functional Disability Prediction from Health Data. | Riccardo Dondi, Mohammad Mehdi Hosseinzadeh |
| 2024 | TIME | FastMinTC+: A Fast and Effective Heuristic for Minimum Timeline Cover on Temporal Networks. | Giorgio Lazzarinetti, Sara Manzoni, Italo Zoppis, Riccardo Dondi |
| 2023 | IWOCA | Timeline Cover in Temporal Graphs: Exact and Approximation Algorithms. | Riccardo Dondi, Alexandru Popa |
| 2022 | ICCS | Dense Temporal Subgraphs in Protein-Protein Interaction Networks. | Riccardo Dondi, Mohammad Mehdi Hosseinzadeh, Italo Zoppis |
| 2021 | CPM | The Longest Run Subsequence Problem: Further Complexity Results. | Riccardo Dondi, Florian Sikora |
| 2021 | IWOCA | Complexity and Algorithms for MUL-Tree Pruning. | Mathieu Gascon, Riccardo Dondi, Nadia El-Mabrouk |
| 2020 | KES | Genetic Algorithms for Finding Episodes in Temporal Networks. | Mauro Castelli, Riccardo Dondi, Mohammad Mehdi Hosseinzadeh |
| 2020 | LATA | Complexity Issues of String to Graph Approximate Matching. | Riccardo Dondi, Giancarlo Mauri, Italo Zoppis |
| 2019 | CSEDU | Optimized Social Explanation for Educational Platforms. | Italo Zoppis, Riccardo Dondi, Sara Manzoni, Giancarlo Mauri, Luca Marconi, Francesco Epifania |
| 2019 | FCT | On the Tractability of Covering a Graph with 2-Clubs. | Riccardo Dondi, Manuel Lafond |
| 2019 | ICCS | Top k 2-Clubs in a Network: A Genetic Algorithm. | Mauro Castelli, Riccardo Dondi, Sara Manzoni, Giancarlo Mauri, Italo Zoppis |
| 2018 | IWOCA | Covering with Clubs: Complexity and Approximability. | Riccardo Dondi, Giancarlo Mauri, Florian Sikora, Italo Zoppis |
| 2018 | PDP | Distributed Heuristics for Optimizing Cohesive Groups: A Support for Clinical Patient Engagement in Social Network Analysis. | Italo Zoppis, Riccardo Dondi, Davide Coppetti, Alessandro Beltramo, Giancarlo Mauri |
| 2018 | WABI | Reconciling Multiple Genes Trees via Segmental Duplications and Losses. | Riccardo Dondi, Manuel Lafond, Cline Scornavacca |
| 2017 | CPM | The Longest Filled Common Subsequence Problem. | Mauro Castelli, Riccardo Dondi, Giancarlo Mauri, Italo Zoppis |
| 2017 | ICCS | 10 | Giuseppe Agapito, Mario Cannataro, Mauro Castelli, Riccardo Dondi, Italo Zoppis |
| 2017 | ICCS | Orthology Correction for Gene Tree Reconstruction: Theoretical and Experimental Results. | Riccardo Dondi, Giancarlo Mauri, Italo Zoppis |
| 2016 | CiE | Parameterized Complexity and Approximation Issues for the Colorful Components Problems. | Riccardo Dondi, Florian Sikora |
| 2016 | COCOA | Finding Disjoint Paths on Edge-Colored Graphs: A Multivariate Complexity Analysis. | Riccardo Dondi, Florian Sikora |
| 2016 | WABI | Correction of Weighted Orthology and Paralogy Relations - Complexity and Algorithmic Results. | Riccardo Dondi, Nadia El-Mabrouk, Manuel Lafond |
| 2015 | CPM | On the Fixed Parameter Tractability and Approximability of the Minimum Error Correction Problem. | Paola Bonizzoni, Riccardo Dondi, Gunnar W. Klau, Yuri Pirola, Nadia Pisanti, Simone Zaccaria |
| 2015 | ICCS | 8 | Stefano Beretta, Mario Cannataro, Riccardo Dondi |
| 2015 | ICCS | Robust Conclusions in Mass Spectrometry Analysis. | Italo Zoppis, Riccardo Dondi, Massimiliano Borsani, Erica Gianazza, Clizia Chinello, Fulvio Magni, Giancarlo Mauri |
| 2014 | CiE | Gene Tree Correction by Leaf Removal and Modification: Tractability and Approximability. | Stefano Beretta, Riccardo Dondi |
| 2014 | LATA | Covering Pairs in Directed Acyclic Graphs. | Niko Beerenwinkel, Stefano Beretta, Paola Bonizzoni, Riccardo Dondi, Yuri Pirola |
| 2013 | CiE | Aligning and Labeling Genomes under the Duplication-Loss Model. | Riccardo Dondi, Nadia El-Mabrouk |
| 2013 | LATA | Duplication-Loss Genome Alignment: Complexity and Algorithm. | Billel Benzaid, Riccardo Dondi, Nadia El-Mabrouk |
| 2013 | TAMC | Resolving Rooted Triplet Inconsistency by Dissolving Multigraphs. | Andrew Chester, Riccardo Dondi, Anthony Wirth |
| 2012 | CPM | Minimum Leaf Removal for Reconciliation: Complexity and Algorithms. | Riccardo Dondi, Nadia El-Mabrouk |
| 2012 | SOFSEM | Complexity Insights of the Minimum Duplication Problem. | Guillaume Blin, Paola Bonizzoni, Riccardo Dondi, Romeo Rizzi, Florian Sikora |
| 2011 | CPM | Finding Approximate and Constrained Motifs in Graphs. | Riccardo Dondi, Guillaume Fertin, Stphane Vialette |
| 2011 | MFCS | On the Complexity of the l-diversity Problem. | Riccardo Dondi, Giancarlo Mauri, Italo Zoppis |
| 2010 | IWOCA | Parameterized Complexity of | Paola Bonizzoni, Gianluca Della Vedova, Riccardo Dondi, Yuri Pirola |
| 2009 | CPM | Maximum Motif Problem in Vertex-Colored Graphs. | Riccardo Dondi, Guillaume Fertin, Stphane Vialette |
| 2009 | FCT | The | Paola Bonizzoni, Gianluca Della Vedova, Riccardo Dondi |
| 2009 | FCT | The Longest Haplotype Reconstruction Problem Revisited. | Riccardo Dondi |
| 2009 | WABI | Minimum Factorization Agreement of Spliced ESTs. | Paola Bonizzoni, Gianluca Della Vedova, Riccardo Dondi, Yuri Pirola, Raffaella Rizzi |
| 2007 | WABI | A Novel Method for Signal Transduction Network Inference from Indirect Experimental Evidence. | Rka Albert, Bhaskar DasGupta, Riccardo Dondi, Sema Kachalo, Eduardo D. Sontag, Alexander Zelikovsky, Kelly Westbrooks |
| 2006 | CPM | Fingerprint Clustering with Bounded Number of Missing Values. | Paola Bonizzoni, Gianluca Della Vedova, Riccardo Dondi, Giancarlo Mauri |
| 2006 | ICCS | Exemplar Longest Common Subsequence. | Paola Bonizzoni, Gianluca Della Vedova, Riccardo Dondi, Guillaume Fertin, Stphane Vialette |
| 2005 | ICCS | Experimental Analysis of a New Algorithm for Partial Haplotype Completion. | Paola Bonizzoni, Gianluca Della Vedova, Riccardo Dondi, Lorenzo Mariani |
| 2005 | ISAAC | Correlation Clustering and Consensus Clustering. | Paola Bonizzoni, Gianluca Della Vedova, Riccardo Dondi, Tao Jiang |
| 2003 | CIAC | Reconciling Gene Trees to a Species Tree. | Paola Bonizzoni, Gianluca Della Vedova, Riccardo Dondi |
| 2003 | Group | Stimulating knowledge discovery and sharing. | Alessandra Agostini, Sara Albolino, Giorgio De Michelis, Flavio De Paoli, Riccardo Dondi |
| 2003 | SEKE | Knowledge Organization and Retrieval in the MILK System. | Roberto Boselli, Flavio De Paoli, Riccardo Dondi |