| 2024 | EPIA | Context-Aware Deep Forecasting: Principles for the Nation-Wide Management of Blood Products. | Miguel Dauphinet, Rui Henriques, Pedro T. Monteiro |
| 2024 | EPIA | Chatbot Decision Support with Intent-Rich Structures in the Hospitality Industry. | Eduardo Machado, Rui Henriques |
| 2024 | IECON | Comparing Deep Neural Networks for 1D Multi-Label Power Quality Disturbance Classification: ResNet, MobileNet, and DenseNet. | Han Shao, Rui Henriques, Hugo Morais, Elisabetta Tedeschi |
| 2022 | AVI | Context-situated visualization of biclusters to aid decisions: going beyond subspaces with parallel coordinates. | Daniel Gonalves, Rafael S. Costa, Rui Henriques |
| 2022 | EDBT | Consolidation of Massive Medical Emergency Events With Heterogeneous Situational Context Data Sources. | Thomas James Z. Tiam-Lee, Rui Henriques, Jos Costa, Vasco Manquinho, Helena Galhardas |
| 2021 | AIME | fMRI Multiple Missing Values Imputation Regularized by a Recurrent Denoiser. | David Calhas, Rui Henriques |
| 2021 | SDM | UNIANO: robust and efficient anomaly consensus in time series sensitive to cross-correlated anomaly profiles. | Leonor Silva, Helena Galhardas, Vasco Manquinho, Rui Henriques |
| 2020 | ECIR | Moving from Formal Towards Coherent Concept Analysis: Why, When and How. | Pavlo Kovalchuk, Diogo Proena, Jos Borbinha, Rui Henriques |
| 2020 | Mobiquitous | Efficient discovery of emerging patternsin heterogeneous spatiotemporal data from mobile sensors. | Francisco Neves, Anna Carolina Finamore, Rui Henriques |
| 2020 | PACBB | Towards Triclustering-Based Classification of Three-Way Clinical Data: A Case Study on Predicting Non-invasive Ventilation in ALS. | Diogo F. Soares, Rui Henriques, Marta Gromicho, Susana Pinto, Mamede de Carvalho, Sara C. Madeira |
| 2019 | ITS | On the Discovery of Educational Patterns using Biclustering. | Rui Henriques, Anna Carolina Finamore, Marco Antonio Casanova |
| 2018 | CPM | Order-Preserving Pattern Matching Indeterminate Strings. | Rui Henriques, Alexandre P. Francisco, Lus M. S. Russo, Hideo Bannai |
| 2015 | EPIA | Pattern-Based Biclustering with Constraints for Gene Expression Data Analysis. | Rui Henriques, Sara C. Madeira |
| 2015 | WABI | BicNET: Efficient Biclustering of Biological Networks to Unravel Non-Trivial Modules. | Rui Henriques, Sara C. Madeira |
| 2013 | ACII | Accessing Emotion Patterns from Affective Interactions Using Electrodermal Activity. | Rui Henriques, Ana Paiva, Cludia Antunes |
| 2013 | HRI | Sensors in the wild: exploring electrodermal activity in child-robot interaction. | Iolanda Leite, Rui Henriques, Carlos Martinho, Ana Paiva |
| 2010 | BPM | Object-Centered Process Modeling: Principles to Model Data-Intensive Systems. | Rui Henriques, Antnio Rito Silva |