| 2020 | SIGCSE | Interdisciplinary Minor in Bioinformatics: First Results and Outlook. | Natalia Khuri, Wendy Lee, K. Virginia Lehmkuhl-Dakhwe, Miri VanHoven, Sami Khuri |
| 2018 | SIGCSE | Introducing Bioinformatics Algorithms in Computer Science Courses: (Abstract Only). | Sami Khuri |
| 2017 | SIGCSE | Increasing the Capacity of STEM Workforce: Minor in Bioinformatics. | Sami Khuri, Miri VanHoven, Natalia Khuri |
| 2008 | SIGCSE | A bioinformatics track in computer science. | Sami Khuri |
| 2005 | CEC | Assembling DNA fragments with parallel algorithms. | Enrique Alba, Gabriel Luque, Sami Khuri |
| 2001 | ICCS | Applying Evolutionary Algorithms to Combinatorial Optimization Problems. | Enrique Alba Torres, Sami Khuri |
| 2001 | ITiCSE | EVEGA: an educational visulalization environment for graph algorithms. | Sami Khuri, Klaus Holzapfel |
| 2000 | ITiCSE | Interactive packages for learning image compression algorithms. | Sami Khuri, Hsiu-Chin Hsu |
| 2000 | SAC | Tools for Visualizing Text Compression Algorithms. | Sami Khuri, Hsiu-Chin Hsu |
| 2000 | SAC | A Grouping Genetic Algorithm for Coloring the Edges of Graphs. | Sami Khuri, Tim Walters, Yanti Sugono |
| 1999 | EPIA | Genetic Algorithms for Solving Open Shop Scheduling Problems. | Sami Khuri, Sowmya Rao Miryala |
| 1999 | SIGCSE | Adding breadth to CS1 and CS2 courses through visual and interactive programming projects. | Ricardo Jimnez-Peris, Sami Khuri, Marta Patio-Martnez |
| 1999 | SIGCSE | Visualizing the CPU scheduler and page replacement algorithms. | Sami Khuri, Hsiu-Chin Hsu |
| 1998 | SIGCSE | Animating parsing algorithms. | Sami Khuri, Yanti Sugono |
| 1997 | SAC | Computing with Haar functions. | Sami Khuri |
| 1997 | SAC | Heuristic algorithms for the terminal assignment problem. | Sami Khuri, Teresa Chiu |
| 1997 | SAC | Randomness of finite strings: a reconstructive approach. | Sami Khuri, Frederick Stern, Teresa Chiu |
| 1996 | ITiCSE | An overview of visualization: its use and design: report of the working group in visualization. | Joe Bergin, Ken Brodlie, Marta Patio-Martnez, Myles F. McNally, Thomas L. Naps, Susan H. Rodger, Judith Wilson, Michael Goldweber, Sami Khuri, Ricardo Jimnez-Peris |
| 1996 | ITiCSE | Neuralis: an artificial neural network package. | Sami Khuri, Jason Williams |
| 1994 | ICEC | An Evolutionary Heuristic for the Maximum Independent Set Problem. | Thomas Bck, Sami Khuri |
| 1994 | SAC | Walsh and Haar functions in genetic algorithms. | Sami Khuri |
| 1994 | SAC | The zero/one multiple knapsack problem and genetic algorithms. | Sami Khuri, Thomas Bck, Jrg Heitktter |
| 1994 | SIGCSE | Intractability: a geometric representation. | Sami Khuri |
| 1994 | SIGCSE | Understanding the bottom-up SLR parser. | Sami Khuri, Jason Williams |
| 1990 | IJCNN | The harmonium and decision problems. | Sami Khuri, Ada Batarekh |
| 1986 | SIGCSE | Counting nodes in binary trees. | Sami Khuri |