| 2024 | ECIR | iDPP@CLEF 2024: The Intelligent Disease Progression Prediction Challenge. | Helena Aidos, Roberto Bergamaschi, Paola Cavalla, Adriano Chi, Arianna Dagliati, Barbara Di Camillo, Mamede de Carvalho, Nicola Ferro, Piero Fariselli, Jose Manuel Garca Dominguez, Sara C. Madeira, Eleonora Tavazzi |
| 2024 | ESANN | Deep Temporal Consensus Clustering for Patient Stratification in Amyotrophic Lateral Sclerosis. | Miguel Pego Roque, Andreia S. Martins, Marta Gromicho, Mamede de Carvalho, Sara C. Madeira, Pedro Toms, Helena Aidos |
| 2023 | ECIR | iDPP@CLEF 2023: The Intelligent Disease Progression Prediction Challenge. | Helena Aidos, Roberto Bergamaschi, Paola Cavalla, Adriano Chi, Arianna Dagliati, Barbara Di Camillo, Mamede de Carvalho, Nicola Ferro, Piero Fariselli, Jose Manuel Garca Dominguez, Sara C. Madeira, Eleonora Tavazzi |
| 2020 | ICPR | Predictive Medicine Using Interpretable Recurrent Neural Networks. | Andr Ferreira, Sara C. Madeira, Marta Gromicho, Mamede de Carvalho, Susana Vinga, Alexandra M. Carvalho |
| 2020 | PACBB | Towards Triclustering-Based Classification of Three-Way Clinical Data: A Case Study on Predicting Non-invasive Ventilation in ALS. | Diogo F. Soares, Rui Henriques, Marta Gromicho, Susana Pinto, Mamede de Carvalho, Sara C. Madeira |
| 2018 | ICDM | Predicting Non-invasive Ventilation in ALS Patients Using Stratified Disease Progression Groups. | Sofia Pires, Marta Gromicho, Susana Pinto, Mamede de Carvalho, Sara C. Madeira |
| 2017 | KDD | Towards a reliable prediction of conversion from Mild Cognitive Impairment to Alzheimer's Disease: stepwise learning using time windows. | Telma Pereira, Alexandre de Mendona, Francisco L. Ferreira, Sara C. Madeira, Manuela Guerreiro |
| 2017 | PACBB | Improving Prognostic Prediction from Mild Cognitive Impairment to Alzheimer's Disease Using Genetic Algorithms. | Francisco L. Ferreira, Sandra Cardoso, Dina Silva, Manuela Guerreiro, Alexandre de Mendona, Sara C. Madeira |
| 2017 | PACBB | Towards Trustworthy Predictions of Conversion from Mild Cognitive Impairment to Dementia: A Conformal Prediction Approach. | Telma Pereira, Sandra Cardoso, Dina Silva, Alexandre de Mendona, Manuela Guerreiro, Sara C. Madeira |
| 2015 | EPIA | Pattern-Based Biclustering with Constraints for Gene Expression Data Analysis. | Rui Henriques, Sara C. Madeira |
| 2015 | WABI | BicNET: Efficient Biclustering of Biological Networks to Unravel Non-Trivial Modules. | Rui Henriques, Sara C. Madeira |
| 2014 | EDM | Mining coherent evolution patterns in education through biclustering. | Andr Vale, Sara C. Madeira, Cludia Antunes |
| 2013 | EPIA | Class Imbalance in the Prediction of Dementia from Neuropsychological Data. | Ceclia Nunes, Dina Silva, Manuela Guerreiro, Alexandre de Mendona, Alexandra M. Carvalho, Sara C. Madeira |
| 2013 | KDD | Heuristic approaches for time-lagged biclustering. | Joana P. Gonalves, Sara C. Madeira |
| 2013 | PACBB | A Workflow for the Application of Biclustering to Mass Spectrometry Data. | Hugo Lpez-Fernndez, Miguel Reboiro-Jato, Sara C. Madeira, Rubn Lpez-Corts, J. D. Nunes-Miranda, Hugo Miguel Santos, Florentino Fdez-Riverola, Daniel Glez-Pea |
| 2012 | PACBB | Prognostic Prediction Using Clinical Expression Time Series: Towards a Supervised Learning Approach Based on Meta-biclusters. | Andr Valrio Carreiro, Artur J. Ferreira, Mrio A. T. Figueiredo, Sara C. Madeira |
| 2012 | PACBB | Parallel e-CCC-Biclustering: Mining Approximate Temporal Patterns in Gene Expression Time Series Using Parallel Biclustering. | Filipe Cristvo, Sara C. Madeira |
| 2011 | PACBB | Baiacu: A Tool for the Visual Analysis of the | Ricardo Santos Aires, Joo A. Carrio, Alexandre P. Francisco, Sara C. Madeira |
| 2011 | PACBB | Biclustering-Based Classification of Clinical Expression Time Series: A Case Study in Patients with Multiple Sclerosis. | Andr Valrio Carreiro, Orlando Anunciao, Joo A. Carrio, Sara C. Madeira |
| 2009 | IWANN | Efficient Biclustering Algorithms for Time Series Gene Expression Data Analysis. | Sara C. Madeira, Arlindo L. Oliveira |
| 2009 | PADL | High Level Thread-Based Competitive Or-Parallelism in Logtalk. | Paulo Moura, Ricardo Rocha, Sara C. Madeira |
| 2008 | ICLP | Thread-Based Competitive Or-Parallelism. | Paulo Moura, Ricardo Rocha, Sara C. Madeira |
| 2007 | APBC | An Efficient Biclustering Algorithm for Finding Genes with Similar Patterns in Time-series Expression Data. | Sara C. Madeira, Arlindo L. Oliveira |
| 2005 | WABI | A Linear Time Biclustering Algorithm for Time Series Gene Expression Data. | Sara C. Madeira, Arlindo L. Oliveira |
| 2003 | EPIA | A Data Mining Approach to Credit Risk Evaluation and Behaviour Scoring. | Sara C. Madeira, Arlindo L. Oliveira, Catarina S. Conceio |