| 2009 | Describing Dynamic Biological Systems in SPDL and SCDL. | Charles C. N. Wang, David A. Hecht, Han C. W. Hsiao, Phillip C.-Y. Sheu, Jeffrey J. P. Tsai |
| 2009 | Combining Agent-Based Models with Stochastic Differential Equations for Gene Regulatory Networks. | Tse-Yi Wang, Kuang-Chi Chen, D. Frank Hsu, Cheng-Yan Kao |
| 2009 | Data Matching for Physical Integration of Biochemical Pathway Databases. | Jyh-Jong Tsay, Bo-Liang Wu, Chien-Wen Chen |
| 2009 | Multi-Modal Registration of Embryonic Images for In Vitro Fertilization. | Chia-Ling Tsai, Su-Ching Liang, William Warger, Charles DiMarzio |
| 2009 | Anomaly-free Prediction of Gene Ontology Annotations Using Bayesian Networks. | Marco Tagliasacchi, Marco Masseroli |
| 2009 | A Human DNA Methylation Site Predictor Based on SVM. | Yi-Ming Sun, Wei-Li Liao, Hsien-Da Huang, Baw-Jhiune Liu, Cheng-Wei Chang, Jorng-Tzong Horng, Li-Ching Wu |
| 2009 | Algorithms Based on Density and Shared Neighbors for Functional Modules Identification in PPI Networks. | Peng-Gang Sun, Lin Gao |
| 2009 | Efficiency Enhancement of Protein Folding for Complete Molecular Simulation via Hardware Computing. | Wen-Tsai Sung |
| 2009 | A Multidimensional Flow Cytometry Data Classification. | Ming-Chih Shih, Shou-Hsuan Stephen Huang, Chung-Che Jeff Chang |
| 2009 | Analysis of Autism Prevalence and Neurotoxins Using Combinatorial Fusion and Association Rule Mining. | Christina Schweikert, Yanjun Li, David Dayya, David Yens, Martin Torrents, D. Frank Hsu |
| 2009 | Multi-Agents System to Model Cell Signalling by Using Fuzzy Cognitive Maps. Application to Computer Simulation of Multiple Myeloma. | Vincent Rodin, Gabriel Querrec, Pascal Ballet, Franois-Regis Bataille, Gireg Desmeulles, Jean Franois Abgrall, Jacques Tisseau |
| 2009 | A Generic Framework of Integrating Segmentation and Registration. | Jonghyun Park, Wanhyun Cho, Soon-Young Park, Junsik Lim, Soo-Hyung Kim, Gueesang Lee |
| 2009 | An Integrative Tool for Gene Regulatory Network Reconstruction Based on Microarray Data. | Jong-Waye Ou, Rouh-Mei Hu, Rong-Ming Chen, C. Y. Tang, Jeffrey J. P. Tsai |
| 2009 | A Novel Approach for Automatic Number of Clusters Detection in Microarray Data Based on Consensus Clustering. | Xuan Vinh Nguyen, Julien Epps |
| 2009 | The Energy Distribution Data Bank: Collecting Energy Features of Protein Molecular Structures. | Dariusz Mrozek, Bozena Malysiak-Mrozek, Stanislaw Kozielski, Andrzej Swierniak |
| 2009 | A Computational Approach to Detect CNVs Using High-throughput Sequencing. | Myungjin Moon, Jaegyoon Ahn, Youngmi Yoon, Chihyun Park, Sanghyun Park, Jeehee Yoon |
| 2009 | Logistic Biclustering Models for Protein Network Inference. | Carla Claudia da Rocha Rego Monteiro, Katia S. Guimares |
| 2009 | Image Analysis for High Content Screening with cellAnalyst. | Jrg Meyer, Ash Pahwa, Peter Saveliev |
| 2009 | Microarray Gene Expression Analysis Using Combinatorial Fusion. | Cameron McMunn-Coffran, Christina Schweikert, D. Frank Hsu |
| 2009 | ATRIPPI: An Atom-residue Preference Scoring Function for Protein-protein Interactions. | Kang-Ping Liu, Lu-Shian Chang, Jinn-Moon Yang |
| 2009 | A New Method to Combine Heterogeneous Data Sources for Candidate Gene Prioritization. | Yongjin Li, Jagdish Chandra Patra, Jiabao Sun |
| 2009 | EEG-Based Spatial Navigation Estimation in a Virtual Reality Driving Environment. | Chin-Teng Lin, Fu-Shu Yang, Te-Chung Chiou, Li-Wei Ko, Jeng-Ren Duann, Klaus Gramann |
| 2009 | Vascular Tree Construction with Anatomical Realism for Retinal Images. | Kai-Shung Lin, Chia-Ling Tsai, Michal Sofka, Chih-Hsiangng Tsai, Shih-Jen Chen, Wei-Yang Lin |
| 2009 | Profiling the Nanoparticles Associated Protein-protein Interactions. | Wei-Chen Liao, Nai-Kuei Huang |
| 2009 | Alternative Feature Mapping for Heterogeneous Gene Data Classification. | Victor C. Liang, Vincent T. Y. Ng |