| 2011 | Less Haste, Less Waste: On Recycling and Its Limits in Strand Displacement Systems. | Anne Condon, Alan J. Hu, Jn Manuch, Chris Thachuk |
| 2011 | Localized Hybridization Circuits. | Harish Chandran, Nikhil Gopalkrishnan, Andrew Phillips, John H. Reif |
| 2011 | Graph-Theoretic Formalization of Hybridization in DNA Sticker Complexes. | Robert Brijder, Joris J. M. Gillis, Jan Van den Bussche |
| 2011 | An Improved DNA-Sticker Addition Algorithm and Its Application to Logarithmic Arithmetic. | Mark G. Arnold |
| 2010 | DNA-Based Fixed Gain Amplifiers and Linear Classifier Circuits. | David Yu Zhang, Georg Seelig |
| 2010 | Towards Domain-Based Sequence Design for DNA Strand Displacement Reactions. | David Yu Zhang |
| 2010 | Simple Evolution of Complex Crystal Species. | Rebecca Schulman, Erik Winfree |
| 2010 | Reversible Transition of Photonic DNA Automaton Using Hairpin-DNA Responding to a Single Kind of Photonic Signal. | Hiroto Sakai, Yusuke Ogura, Jun Tanida |
| 2010 | Efficient Turing-Universal Computation with DNA Polymers. | Lulu Qian, David Soloveichik, Erik Winfree |
| 2010 | Design of a Functional Nanomaterial with Recognition Ability for Constructing Light-Driven Nanodevices. | Xingguo Liang, Toshio Mochizuki, Taiga Fujii, Hiromu Kashida, Hiroyuki Asanuma |
| 2010 | Randomized Self Assembly of Rectangular Nano Structures. | Vamsi Kundeti, Sanguthevar Rajasekaran |
| 2010 | Triangular Tile Self-assembly Systems. | Lila Kari, Shinnosuke Seki, Zhi Xu |
| 2010 | Operation of a DNA-Based Autocatalytic Network in Serum. | Elton Graugnard, Amber Cox, Jeunghoon Lee, Cheryl Jorcyk, Bernard Yurke, William L. Hughes |
| 2010 | High-Fidelity DNA Hybridization Using Programmable Molecular DNA Devices. | Nikhil Gopalkrishnan, Harish Chandran, John H. Reif |
| 2010 | Synthesizing Minimal Tile Sets for Patterned DNA Self-assembly. | Mika Gs, Pekka Orponen |
| 2010 | Search and Validation of Short Genome-Wide Biomarkers for Bacterial Biological Phylogenies. | Max H. Garzon, Tit-Yee Wong |
| 2010 | Negative Interactions in Irreversible Self-assembly. | David Doty, Lila Kari, Benot Masson |
| 2010 | Scalable, Time-Responsive, Digital, Energy-Efficient Molecular Circuits Using DNA Strand Displacement. | Ehsan Chiniforooshan, David Doty, Lila Kari, Shinnosuke Seki |
| 2010 | Optimizing Tile Concentrations to Minimize Errors and Time for DNA Tile Self-assembly Systems. | Ho-Lin Chen, Ming-Yang Kao |
| 2010 | Improving Efficiency of 3-SAT-Solving Tile Systems. | Yuriy Brun |
| 2009 | Distributed Agreement in Tile Self-assembly. | Aaron D. Sterling |
| 2009 | Time-Complexity of Multilayered DNA Strand Displacement Circuits. | Georg Seelig, David Soloveichik |
| 2009 | Positional State Representation and Its Transition Control for Photonic DNA Automaton. | Hiroto Sakai, Yusuke Ogura, Jun Tanida |
| 2009 | Construction of AND Gate for RTRACS with the Capacity of Extension to NAND Gate. | Yoko Sakai, Yoriko Mawatari, Kiyonari Yamasaki, Ko-ichiroh Shohda, Akira Suyama |
| 2009 | The Effect of Malformed Tiles on Tile Assemblies within kTAM. | Ya Meng, Navin Kashyap |