| 2008 | An integrative approach for predicting interactions of protein regions. | Sven-Eric Schelhorn, Thomas Lengauer, Mario Albrecht |
| 2008 | Automatic decomposition of kinetic models of signaling networks minimizing the retroactivity among modules. | Julio Saez-Rodriguez, Stefan Gayer, Martin Ginkel, Ernst Dieter Gilles |
| 2008 | Using structural bioinformatics to investigate the impact of non synonymous SNPs and disease mutations: scope and limitations. | Joke Reumers, Joost Schymkowitz, Frederic Rousseau |
| 2008 | From minimal signed circuits to the dynamics of Boolean regulatory networks. | Elisabeth Remy, Paul Ruet |
| 2008 | PhyloDetect: a likelihood-based strategy for detecting microorganisms with diagnostic microarrays. | Hubert Rehrauer, Susan Schnmann, Leo Eberl, Ralph Schlapbach |
| 2008 | Segment-based multiple sequence alignment. | Tobias Rausch, Anne-Katrin Emde, David Weese, Andreas Dring, Cdric Notredame, Knut Reinert |
| 2008 | Gain and loss of phosphorylation sites in human cancer. | Predrag Radivojac, Peter H. Baenziger, Maricel G. Kann, Matthew E. Mort, Matthew W. Hahn, Sean D. Mooney |
| 2008 | Functional coherence in domain interaction networks. | Jayesh Pandey, Mehmet Koyutrk, Shankar Subramaniam, Ananth Grama |
| 2008 | Detection of 3D atomic similarities and their use in the discrimination of small molecule protein-binding sites. | Rafael Najmanovich, Natalja Kurbatova, Janet M. Thornton |
| 2008 | Annotation of protein residues based on a literature analysis: cross-validation against UniProtKB. | Kevin Nagel, Antonio Jimeno-Yepes, Dietrich Rebholz-Schuhmann |
| 2008 | SIRENE: supervised inference of regulatory networks. | Fantine Mordelet, Jean-Philippe Vert |
| 2008 | Temporal logic patterns for querying dynamic models of cellular interaction networks. | Pedro T. Monteiro, Delphine Ropers, Radu Mateescu, Ana T. Freitas, Hidde de Jong |
| 2008 | ChIPmix: mixture model of regressions for two-color ChIP-chip analysis. | Marie-Laure Martin-Magniette, Tristan Mary-Huard, Caroline Brard, Stphane Robin |
| 2008 | Connect the dots: exposing hidden protein family connections from the entire sequence tree. | Yaniv Loewenstein, Michal Linial |
| 2008 | An analysis of different ontological approaches to describe renal mutant phenotypes. | Kirsty Lee, Duncan Davidson |
| 2008 | Logical analysis of survival data: prognostic survival models by detecting high-degree interactions in right-censored data. | Louis-Philippe Kronek, Anupama Reddy |
| 2008 | An environmental perspective on large-scale genome clustering based on metabolic capabilities. | Gabi Kastenmller, Johann Gasteiger, Hans-Werner Mewes |
| 2008 | Non-parametric estimation of posterior error probabilities associated with peptides identified by tandem mass spectrometry. | Lukas Kll, John D. Storey, William Stafford Noble |
| 2008 | Analysis of segmental duplications via duplication distance. | Crystal L. Kahn, Benjamin J. Raphael |
| 2008 | Mining significant tree patterns in carbohydrate sugar chains. | Kosuke Hashimoto, Ichigaku Takigawa, Motoki Shiga, Minoru Kanehisa, Hiroshi Mamitsuka |
| 2008 | Inter-species normalization of gene mentions with GNAT. | Jrg Hakenberg, Conrad Plake, Robert Leaman, Michael Schroeder, Graciela Gonzalez |
| 2008 | Logical modelling of the role of the Hh pathway in the patterning of the | Aitor Gonzlez, Claudine Chaouiya, Denis Thieffry |
| 2008 | Gaussian process modelling of latent chemical species: applications to inferring transcription factor activities. | Pei Gao, Antti Honkela, Magnus Rattray, Neil D. Lawrence |
| 2008 | COSMIC, curating the cancer variome. | Simon A. Forbes, Gurpreet W. Tang, Jon W. Teague, P. Andrew Futreal, Michael R. Stratton |
| 2008 | Efficient representation and | Paulo G. S. da Fonseca, Katia S. Guimares, Marie-France Sagot |