| 2005 | Augmented cell-graphs for automated cancer diagnosis. | Cigdem Demir, S. Humayun Gultekin, Blent Yener |
| 2005 | DPDB: a database for the storage, representation and analysis of polymorphism in the | Snia Casillas, Natalia Petit, Antonio Barbadilla |
| 2005 | Predicting protein stability changes from sequences using support vector machines. | Emidio Capriotti, Piero Fariselli, Remo Calabrese, Rita Casadio |
| 2005 | SIMAP - The similarity matrix of proteins. | Roland Arnold, Thomas Rattei, Patrick Tischler, Minh-Duc Truong, Volker Stmpflen, Hans-Werner Mewes |
| 2005 | Decomposing protein networks into domain-domain interactions. | Mario Albrecht, Carola Huthmacher, Silvio C. E. Tosatto, Thomas Lengauer |
| 2003 | Flexible structure alignment by chaining aligned fragment pairs allowing twists. | Yuzhen Ye, Adam Godzik |
| 2003 | Comparative genomics of malaria parasites and its exploitation in a rodent malaria model. | Andy Waters |
| 2003 | Extracting active pathways from gene expression data. | Jean-Philippe Vert, Minoru Kanehisa |
| 2003 | The proteome and the metabolome. | Janet M. Thornton |
| 2003 | Estimating gene networks from gene expression data by combining Bayesian network model with promoter element detection. | Yoshinori Tamada, SunYong Kim, Hideo Bannai, Seiya Imoto, Kousuke Tashiro, Satoru Kuhara, Satoru Miyano |
| 2003 | Sources of genetic and phenotypic variability. | Franois Taddei |
| 2003 | Gene prediction with a hidden Markov model and a new intron submodel. | Mario Stanke, Stephan Waack |
| 2003 | Finding optimal degenerate patterns in DNA sequences. | Daisuke Shinozaki, Tatsuya Akutsu, Osamu Maruyama |
| 2003 | Biclustering microarray data by Gibbs sampling. | Qizheng Sheng, Yves Moreau, Bart De Moor |
| 2003 | Divide-and-conquer multiple alignment with segment-based constraints. | Michael Sammeth, Burkhard Morgenstern, Jens Stoye |
| 2003 | Fast feature selection using a simple estimation of distribution algorithm: a case study on splice site prediction. | Yvan Saeys, Sven Degroeve, Dirk Aeyels, Yves Van de Peer, Pierre Rouz |
| 2003 | A description of dynamical graphs associated to elementary regulatory circuits. | Elisabeth Remy, Brigitte Moss, Claudine Chaouiya, Denis Thieffry |
| 2003 | Reconstructing tumor genome architectures. | Benjamin J. Raphael, Stanislav Volik, Colin C. Collins, Pavel A. Pevzner |
| 2003 | The shortest common supersequence problem in a microarray production setting. | Sven Rahmann |
| 2003 | Finding subtle motifs by branching from sample strings. | Alkes L. Price, Sriram Ramabhadran, Pavel A. Pevzner |
| 2003 | Gene networks inference using dynamic Bayesian networks. | Bruno-Edouard Perrin, Liva Ralaivola, Aurlien Mazurie, Samuele Bottani, Jacques Mallet, Florence d'Alch-Buc |
| 2003 | MCMC genome rearrangement. | Istvn Mikls |
| 2003 | Artificial gene networks for objective comparison of analysis algorithms. | Pedro Mendes, Wei Sha, Keying Ye |
| 2003 | A suffix tree approach to the interpretation of tandem mass spectra: applications to peptides of non-specific digestion and post-translational modifications. | Bingwen Lu, Ting Chen |
| 2003 | Modeling sequencing errors by combining Hidden Markov models. | Claudio Lottaz, Christian Iseli, C. Victor Jongeneel, Philipp Bucher |