| 2003 | Discovery of significant rules for classifying cancer diagnosis data. | Jinyan Li, Huiqing Liu, See-Kiong Ng, Limsoon Wong |
| 2003 | Analyzing resistance phenomena in HIV with bioinformatics methods. | Thomas Lengauer |
| 2003 | A novel approach to fold recognition using sequence-derived properties from sets of structurally similar local fragments of proteins. | Torgeir R. Hvidsten, Andriy Kryshtafovych, Henryk Jan Komorowski, Krzysztof Fidelis |
| 2003 | A rapid method for detection of putative RNAi target genes in genomic data. | Yair Horesh, Amihood Amir, Shulamit Michaeli, Ron Unger |
| 2003 | Upper bounds on maximum likelihood for phylogenetic trees. | Michael D. Hendy, Barbara R. Holland |
| 2003 | Inferring strengths of protein-protein interactions from experimental data using linear programming. | Morihiro Hayashida, Nobuhisa Ueda, Tatsuya Akutsu |
| 2003 | Probabilistic models for identifying regulation networks. | Nir Friedman |
| 2003 | Exploring potential target genes of signaling pathways by predicting conserved transcription factor binding sites. | Christoph Dieterich, Ralf Herwig, Martin Vingron |
| 2003 | Predicting gene function in Saccharomyces cerevisiae. | Amanda Clare, Ross D. King |
| 2003 | HMM sampling and applications to gene finding and alternative splicing. | Simon Cawley, Lior Pachter |
| 2003 | How significant is 98.5% 'junk' in mammalian genomes? | Jrgen Brosius |
| 2003 | Ab initio reconstruction of metabolic pathways. | Frdric Boyer, Alain Viari |
| 2003 | Searching for statistically significant regulatory modules. | Timothy L. Bailey, William Stafford Noble |
| 2003 | Metabolic economics and microbial proteome evolution. | Hiroshi Akashi |
| 2003 | Computational detection of cis-regulatory modules. | Stein Aerts, Peter Van Loo, Gert Thijs, Yves Moreau, Bart De Moor |
| 2002 | An approximate matching algorithm for finding (sub-)optimal sequences in S-attributed grammars. | Jrme Waldisphl, Behshad Behzadi, Jean-Marc Steyaert |
| 2002 | Principles of protein-protein interactions. | Sarah A. Teichmann |
| 2002 | Application of metabolomics to plant genotype discrimination using statistics and machine learning. | Janet Taylor, Ross D. King, Thomas Altmann, Oliver Fiehn |
| 2002 | The mutual information: Detecting and evaluating dependencies between variables. | Ralph E. Steuer, Jrgen Kurths, Carsten O. Daub, Janko Weise, Joachim Selbig |
| 2002 | BioMiner - modeling, analyzing, and visualizing biochemical pathways and networks. | Marite Sirava, T. Schfer, Markus Eiglsperger, Michael Kaufmann, Oliver Kohlbacher, Erich Bornberg-Bauer, Hans-Peter Lenhof |
| 2002 | Genome segmentation using piecewise constant intensity models and reversible jump MCMC. | Marko Salmenkivi, Juha Kere, Heikki Mannila |
| 2002 | Building and analysing genome-wide gene disruption networks. | Johan Rung, Thomas Schlitt, Alvis Brazma, Karlis Freivalds, Jaak Vilo |
| 2002 | Building an automated classification of DNA-binding protein domains. | Julia V. Ponomarenko, Philip E. Bourne, Ilya N. Shindyalov |
| 2002 | ProClust: improved clustering of protein sequences with an extended graph-based approach. | P. Pipenbacher, Alexander Schliep, Sebastian Schneckener, Alexander Schnhuth, Dietmar Schomburg, Rainer Schrader |
| 2002 | Selecting targets for therapeutic validation through differential protein expression using chromatography-mass spectrometry. | Scott Patterson |