| 1998 | Phylogenetic Inference in Protein Superfamilies: Analysis of SH2 Domains. | Kimmen Sjlander |
| 1998 | Identification of Divergent Functions in Homologous Proteins by Induction over Conserved Modules. | Imran Shah, Lawrence Hunter |
| 1998 | A Surface Measure for Probabilistic Structural Computations. | Jeanette P. Schmidt, Cheng Che Chen, Jonathan L. Cooper, Russ B. Altman |
| 1998 | Sequence Assembly Validation by Multiple Restriction Digest Fragment Coverage Analysis. | Eric C. Rouchka, David J. States |
| 1998 | Bayesian Protein Family Classifier. | Kunbin Qu, Lee Ann McCue, Charles E. Lawrence |
| 1998 | Prediction of Signal Peptides and Signal Anchors by a Hidden Markov Model. | Henrik Nielsen, Anders Krogh |
| 1998 | Segment-Based Scores for Pairwise and Multiple Sequence Alignments. | Burkhard Morgenstern, William R. Atchley, Klaus Hahn, Andreas Dress |
| 1998 | Modeling Protein Homopolymeric Repeats: Possible Polyglutamine Structural Motifs for Huntington's Disease. | Richard H. Lathrop, Malcolm S. Casale, Douglas J. Tobias, J. Lawrence Marsh, Leslie M. Thompson |
| 1998 | GenExpress: A Computer System for Description, Analysis and Recognition of Regulatory Sequences in Eukaryotic Genome. | Nikolay A. Kolchanov, Mikhail P. Ponomarenko, Alexander E. Kel, Yury V. Kondrakhin, Anatoly S. Frolov, Fedor A. Kolpakov, T. N. Goryachkovskaya, O. V. Kel, Elena A. Ananko, Elena V. Ignatieva, Olga A. Podkolodnaya, Vladimir N. Babenko, Irina L. Stepanenko, Aida G. Romashchenko, Tatyana I. Merkulova, Denis G. Vorobiev, Sergey V. Lavryushev, Y. V. Ponomarenko, Alexey V. Kochetov, G. B. Kolesov, Victor V. Solovyev, Luciano Milanesi, Nikolay L. Podkolodny, Edgar Wingender, T. Heinemeyer |
| 1998 | BioSim: A New Qualitative Simulation Environment for Molecular Biology. | Karsten R. Heidtke, Steffen Schulze-Kremer |
| 1998 | Hierarchical Minimization with Distance and Angle Constraints. | John R. Gunn |
| 1998 | The LabFlow System for Workflow Management in Large Scale Biology Research Laboratories. | Nathan Goodman, Steve Rozen, Lincoln Stein |
| 1998 | IMGT/LIGM-DB: A Systematized Approach for ImMunoGeneTics Database Coherence and Data Distribution Improvement. | Vronique Giudicelli, Denys Chaume, Marie-Paule Lefranc |
| 1998 | A Statistical Theory of Sequence Alignment with Gaps. | Dirk Drasdo, Terence Hwa, Michael Lssig |
| 1998 | Advanced Query Mechanisms for Biological Databases. | I-Min A. Chen, Anthony Kosky, Victor M. Markowitz, Ernest Szeto, Thodoros Topaloglou |
| 1998 | Computational Applications of DNA Structural Scales. | Pierre Baldi, Sren Brunak, Yves Chauvin, Anders Gorm Pedersen |
| 1998 | TAMBIS: Transparent Access to Multiple Bioinformatics Information Sources. | Patricia G. Baker, Andy Brass, Sean Bechhofer, Carole A. Goble, Norman W. Paton, Robert Stevens |
| 1998 | Calculating the Exact Probability of Language-Like Patterns in Biomolecular Sequences. | Kevin Atteson |
| 1998 | Compression of Strings with Approximate Repeats. | Lloyd Allison, Timothy Edgoose, Trevor I. Dix |
| 1998 | The Ribosome Scanning Model for Translation Initiation: Implications for Gene Prediction and Full-Length cDNA Detection. | Pankaj Agarwal, Vineet Bafna |
| 1997 | Bayesian Adaptive Alignment and Inference. | Jun Zhu, Jun S. Liu, Charles E. Lawrence |
| 1997 | Functional Prediction of B. subtilis Genes from Their Regulatory Sequences. | Tetsushi Yada, Yasushi Totoki, Takahiro Ishii, Kenta Nakai |
| 1997 | Inferring Gene Structures in Genomic Sequences Using Pattern Recognition and Expressed Sequence Tags. | Ying Xu, Richard J. Mural, Edward C. Uberbacher |
| 1997 | Better Cutters for Protein Mass Fingerprinting: Preliminary Findings. | Michael J. Wise, Tim Littlejohn, Ian Humphery-Smith |
| 1997 | SEALS: A System for Easy Analysis of Lots of Sequences. | D. Roland Walker, Eugene V. Koonin |