| 1997 | A New Plug-In Software Architecture Applied for a Portable Molecular Structure Browser. | Yutaka Ueno, Kiyoshi Asai |
| 1997 | Inference of Molecular Phylogenetic Tree Based on Minimum Model-Based Complexity Method. | Hiroshi Tanaka, Fengrong Ren, Toshitsugu Okayama, Takashi Gojobori |
| 1997 | Automated Alignment of RNA Sequences to Pseudoknotted Structures. | Jack E. Tabaska, Gary D. Stormo |
| 1997 | Protein Model Representation and Construction. | M. Sullivan, Janice I. Glasgow, Evan W. Steeg, Laurence Leherte, Suzanne Fortier |
| 1997 | Generating Benchmarks for Multiple Sequence Alignments and Phylogenic Reconstructions. | Jens Stoye, Dirk Evers, Folker Meyer |
| 1997 | The Gene-Finder Computer Tools for Analysis of Human and Model Organisms Genome Sequences. | Victor V. Solovyev, Asaf A. Salamov |
| 1997 | Hierarchical Protein Structure Superposition Using Both Secondary Structure and Atomic Representations. | Amit Pal Singh, Douglas L. Brutlag |
| 1997 | Predicting Enzyme Function from Sequence: A Systematic Appraisal. | Imran Shah, Lawrence Hunter |
| 1997 | Adding Semantics to Genome Databases: Towards an Ontology for Molecular Biology. | Steffen Schulze-Kremer |
| 1997 | Modeling Transcription Factor Binding Sites with Gibbs Sampling and Minimum Description Length Encoding. | Jonathan Schug, G. Christian Overton |
| 1997 | CARTHAGENE: Constructing and Joining Maximum Likelihood Genetic Maps. | Thomas Schiex, Christine Gaspin |
| 1997 | Extraction of Substructures of Proteins Essential to their Biological Functions by a Data Mining Technique. | Kenji Satou, Toshihide Ono, Yoshihisa Yamamura, Emiko Furuichi, Satoru Kuhara, Toshihisa Takagi |
| 1997 | A CORBA Server for the Radiation Hybrid Database. | Patricia Rodriguez-Tom, Carsten Helgesen, Philip Lijnzaad, Kim Jungfer |
| 1997 | Novel Techniques for Visualizing Biological Information. | John Alan Robinson, Tomas P. Flores |
| 1997 | Modeling Antibody Side Chain Conformations Using Heuristic Database Search. | David W. Ritchie, Graham J. L. Kemp |
| 1997 | Large Scale Protein Modeling and Model Repository. | Manuel C. Peitsch |
| 1997 | Neural Network Prediction of Translation Initiation Sites in Eukaryotes: Perspectives for EST and Genome Analysis. | Anders Gorm Pedersen, Henrik Nielsen |
| 1997 | Automatic Construction of Knowledge Base from Biological Papers. | Yoshihiro Ohta, Yasunori Yamamoto, Tomoko Okazaki, Ikuo Uchiyama, Toshihisa Takagi |
| 1997 | PDB-REPRDB: A Database of Representative Protein Chains in PDB (Protein Data Bank). | Tamotsu Noguchi, Kentaro Onizuka, Yutaka Akiyama, Minoru Saito |
| 1997 | Selecting Optimal Oligonucleotide Primers for Multiplex PCR. | Pierre Nicodme, Jean-Marc Steyaert |
| 1997 | Enumerating and Ranking Discrete Motifs. | Craig G. Nevill-Manning, Komal S. Sethi, Thomas D. Wu, Douglas L. Brutlag |
| 1997 | Multi-Body Interactions within the Graph of Protein Structure. | Peter J. Munson, Raj K. Singh |
| 1997 | A Fast Heuristic Algorithm for a Probe Mapping Problem. | Brendan Mumey |
| 1997 | ANOLEA: A WWW Server to Assess Protein Structures. | Francisco Melo, Damien Devos, Eric Depiereux, Ernest Feytmans |
| 1997 | Two Methods for Improving Performance of a HMM and their Application for Gene Finding. | Anders Krogh |