| 1997 | Detection of Distant Structural Similarities in a Set of Proteins Using a Fast Graph-Based Method. | Ina Koch, Thomas Lengauer |
| 1997 | Prediction of Enzyme Classification from Protein Sequence without the Use of Sequence Similarity. | Marie desJardins, Peter D. Karp, Markus Krummenacker, Thomas J. Lee, Christos A. Ouzounis |
| 1997 | The Context-Dependence of Amino Acid Properties. | Thomas R. Ioerger |
| 1997 | Identifying Chimerism in Proteins Using Hidden Markov Models of Codon Usage. | Lawrence Hunter, Barry Zeeberg |
| 1997 | Better Prediction of Protein Cellular Localization Sites with the it k Nearest Neighbors Classifier. | Paul Horton, Kenta Nakai |
| 1997 | Decision Support System for the Evolutionary Classification of Protein Structures. | Liisa Holm, Chris Sander |
| 1997 | RIFLE: Rapid Identification of Microorganisms by Fragment Length Evaluation. | Henning Hermjakob, Robert Giegerich, Walter Arnold |
| 1997 | Domain Identification by Clustering Sequence Alignments. | Xiaojun Guan |
| 1997 | Finding Common Sequence and Structure Motifs in a Set of RNA Sequences. | Jan Gorodkin, Laurie J. Heyer, Gary D. Stormo |
| 1997 | Incorporating Global Information into Secondary Structure Prediction with Hidden Markov Models of Protein Folds. | Valentina Di Francesco, Philip McQueen, Jean Garnier, Peter J. Munson |
| 1997 | A Knowledge Base for D. melanogaster Gene Interactions Involved in Pattern Formation. | Jrme Euzenat, Christophe Chemla, Bernard Jacq |
| 1997 | Protein Folding Class Predictor for SCOP: Approach Based on Global Descriptors. | Inna Dubchak, Ilya B. Muchnik, Sung-Hou Kim |
| 1997 | Density of States, Metastable States, and Saddle Points: Exploring the Energy Landscape of an RNA Molecule. | Jan Cupal, Christoph Flamm, Alexander Renner, Peter F. Stadler |
| 1997 | RIBOWEB: Linking Structural Computations to a Knowledge Base of Published Experimental Data. | Richard O. Chen, Ramon M. Felciano, Russ B. Altman |
| 1997 | Application of Genetic Search in Derivation of Matrix Models of Peptide Binding to MHC Molecules. | Vladimir Brusic, Christian Schnbach, Masafumi Takiguchi, Victor Ciesielski, Leonard C. Harrison |
| 1997 | Data Mining for Regulatory Elements in Yeast Genome. | Alvis Brazma, Jaak Vilo, Esko Ukkonen, Kimmo Valtonen |
| 1997 | Dynamite: A Flexible Code Generating Language for Dynamic Programming Methods Used in Sequence Comparison. | Ewan Birney, Richard Durbin |
| 1997 | Code Generation through Annotation of Macromolecular Structure Data. | John Biggs, Calton Pu, Philip E. Bourne |
| 1997 | Beta-Sheet Prediction Using Inter-Strand Residue Pairs and Refinement with Hopfield Neural Network. | Minoru Asogawa |
| 1997 | Self-Organizing Neural Maps of the Coding Sequences of G-protein-coupled Receptors Reveal Local Domains Associated with Potentially Functional Determinants in the Proteins. | P. Arrigo, Piero Fariselli, Rita Casadio |
| 1997 | Protein Sequence Annotation in the Genome Era: The Annotation Concept of SWISS-PROT + TREMBL. | Rolf Apweiler, Alain Gateau, Sergio Contrino, Maria Jesus Martin, Vivien Junker, Claire O'Donovan, Fiona Lang, Nicoletta Mitaritonna, Stephanie Kappus, Amos Bairoch |
| 1997 | Automatic Annotation for Biological Sequences by Etraction of Keywords from MEDLINE Abstracts: Development of a Prototype System. | Miguel A. Andrade, Alfonso Valencia |
| 1997 | Standardized Representations of the Literature: Combining Diverse Sources of Ribosomal Data. | Russ B. Altman, Neil F. Abernethy, Richard O. Chen |
| 1997 | Increasing Consensus Accuracy in DNA Fragment Assemblies by Incorporating Fluorescent Trace Representations. | Carolyn F. Allex, Schuyler F. Baldwin, Jude W. Shavlik, Frederick R. Blattner |
| 1996 | Gene Recognition in Cyanobacterium Genomic Sequence Data Using the Hidden Markov Model. | Tetsushi Yada, Makoto Hirosawa |