| 2007 | A statistical method for alignment-free comparison of regulatory sequences. | Miriam R. Kantorovitz, Gene E. Robinson, Saurabh Sinha |
| 2007 | Different mechanistic requirements for prokaryotic and eukaryotic chaperonins: a lattice study. | Etai Jacob, Amnon Horovitz, Ron Unger |
| 2007 | Reconstruction of highly heterogeneous gene-content evolution across the three domains of life. | Wataru Iwasaki, Toshihisa Takagi |
| 2007 | Systematic discovery of functional modules and context-specific functional annotation of human genome. | Yu Huang, Haifeng Li, Haiyan Hu, Xifeng Yan, Michael S. Waterman, Haiyan Huang, Xianghong Jasmine Zhou |
| 2007 | Bayesian association of haplotypes and non-genetic factors to regulatory and phenotypic variation in human populations. | Jim C. Huang, Anitha Kannan, John M. Winn |
| 2007 | Using genome-context data to identify specific types of functional associations in pathway/genome databases. | Michelle L. Green, Peter D. Karp |
| 2007 | Optimized design and assessment of whole genome tiling arrays. | Stefan Grf, Fiona G. G. Nielsen, Stefan Kurtz, Martijn A. Huynen, Ewan Birney, Henk Stunnenberg, Paul Flicek |
| 2007 | Dead-End Elimination with Backbone Flexibility. | Ivelin Georgiev, Bruce Randall Donald |
| 2007 | Anisotropic fluctuations of amino acids in protein structures: insights from X-ray crystallography and elastic network models. | Eran Eyal, Chakra Chennubhotla, Lee-Wei Yang, Ivet Bahar |
| 2007 | GPDTI: A Genetic Programming Decision Tree Induction method to find epistatic effects in common complex diseases. | Jess K. Estrada-Gil, Juan C. Fernndez-Lpez, Enrique Hernndez-Lemus, Irma Silva-Zolezzi, Alfredo Hidalgo-Miranda, Gerardo Jimnez-Snchez, Edgar E. Vallejo-Clemente |
| 2007 | Computational prediction of host-pathogen protein-protein interactions. | Matthew D. Dyer, T. M. Murali, Bruno W. S. Sobral |
| 2007 | Identification of functional modules from conserved ancestral protein-protein interactions. | Janusz Dutkowski, Jerzy Tiuryn |
| 2007 | Cotranslational protein folding - fact or fiction? | Charlotte M. Deane, Mingqiang Dong, Fabien P. E. Huard, Braddon K. Lance, Graham R. Wood |
| 2007 | Structural templates predict novel protein interactions and targets from pancreas tumour gene expression data. | Gihan Dawelbait, Christof Winter, Yanju Zhang, Christian Pilarsky, Robert Grtzmann, Jrg-Christian Heinrich, Michael Schroeder |
| 2007 | Choosing where to look next in a mutation sequence space: Active Learning of informative p53 cancer rescue mutants. | Samuel A. Danziger, Jue Zeng, Ying Wang, Rainer K. Brachmann, Richard H. Lathrop |
| 2007 | Homology search for genes. | Xuefeng Cui, Toms Vinar, Brona Brejov, Dennis E. Shasha, Ming Li |
| 2007 | In search of lost introns. | Mikls Csrs, J. Andrew Holey, Igor B. Rogozin |
| 2007 | A physical model for tiling array analysis. | Ho-Ryun Chung, Dennis Kostka, Martin Vingron |
| 2007 | Automated image analysis of protein localization in budding yeast. | Shann-Ching Chen, Ting Zhao, Geoffrey J. Gordon, Robert F. Murphy |
| 2007 | RankMotif++: a motif-search algorithm that accounts for relative ranks of K-mers in binding transcription factors. | Xiaoyu Chen, Timothy R. Hughes, Quaid Morris |
| 2007 | Supervised reconstruction of biological networks with local models. | Kevin Bleakley, Grard Biau, Jean-Philippe Vert |
| 2007 | Kernel-based data fusion for gene prioritization. | Tijl De Bie, Lon-Charles Tranchevent, Liesbeth M. M. van Oeffelen, Yves Moreau |
| 2007 | Reconstructing sibling relationships in wild populations. | Tanya Y. Berger-Wolf, Saad I. Sheikh, Bhaskar DasGupta, Mary V. Ashley, Isabel C. Caballero, Wanpracha Art Chaovalitwongse, Satya Lahari Putrevu |
| 2007 | Manual curation is not sufficient for annotation of genomic databases. | William A. Baumgartner Jr., K. Bretonnel Cohen, Lynne M. Fox, George K. Acquaah-Mensah, Lawrence Hunter |
| 2007 | An ensemble framework for clustering protein-protein interaction networks. | Sitaram Asur, Duygu Ucar, Srinivasan Parthasarathy |