| 2007 | Efficient parameter estimation for RNA secondary structure prediction. | Mirela Andronescu, Anne Condon, Holger H. Hoos, David H. Mathews, Kevin P. Murphy |
| 2007 | Multiway analysis of epilepsy tensors. | Evrim Acar, Canan Aykut-Bingl, Haluk Bingol, Rasmus Bro, Blent Yener |
| 2006 | A sequence-based filtering method for ncRNA identification and its application to searching for riboswitch elements. | Shaojie Zhang, Ilya Borovok, Yair Aharonowitz, Roded Sharan, Vineet Bafna |
| 2006 | Accessing bioscience images from abstract sentences. | Hong Yu, Minsuk Lee |
| 2006 | Inferring Functional Pathways from Multi-Perturbation Data. | Nir Yosef, Alon Kaufman, Eytan Ruppin |
| 2006 | ISMB 2006 Organization. | |
| 2006 | Protein classification using ontology classification. | Katy Wolstencroft, Phillip W. Lord, Lydia Tabernero, Andy Brass, Robert Stevens |
| 2006 | SNP Function Portal: a web database for exploring the function implication of SNP alleles. | Pinglang Wang, Manhong Dai, Weijian Xuan, Richard C. McEachin, Anne U. Jackson, Laura J. Scott, Brian D. Athey, Stanley J. Watson, Fan Meng |
| 2006 | Novel Unsupervised Feature Filtering of Biological Data. | Roy Varshavsky, Assaf Gottlieb, Michal Linial, David Horn |
| 2006 | Computational inference of the molecular logic for synaptic connectivity in | Vinay Varadan, David M. Miller III, Dimitris Anastassiou |
| 2006 | An integrative approach for causal gene identification and gene regulatory pathway inference. | Zhidong Tu, Li Wang, Michelle N. Arbeitman, Ting Chen, Fengzhu Sun |
| 2006 | A computational approach toward label-free protein quantification using predicted peptide detectability. | Haixu Tang, Randy J. Arnold, Pedro Alves, Zhiyin Xun, David E. Clemmer, Milos V. Novotny, James P. Reilly, Predrag Radivojac |
| 2006 | ARTS: accurate recognition of transcription starts in human. | Sren Sonnenburg, Alexander Zien, Gunnar Rtsch |
| 2006 | An ontology for a Robot Scientist. | Larisa N. Soldatova, Amanda Clare, Andrew Sparkes, Ross D. King |
| 2006 | On counting position weight matrix matches in a sequence, with application to discriminative motif finding. | Saurabh Sinha |
| 2006 | Integrating image data into biomedical text categorization. | Hagit Shatkay, Nawei Chen, Dorothea Blostein |
| 2006 | Relative contributions of structural designability and functional diversity in molecular evolution of duplicates. | Boris E. Shakhnovich |
| 2006 | Integrating copy number polymorphisms into array CGH analysis using a robust HMM. | Sohrab P. Shah, Xiang Xuan, Ronald J. deLeeuw, Mehrnoush Khojasteh, Wan L. Lam, Raymond T. Ng, Kevin P. Murphy |
| 2006 | Decoding non-unique oligonucleotide hybridization experiments of targets related by a phylogenetic tree. | Alexander Schliep, Sven Rahmann |
| 2006 | Constructing Near-Perfect Phylogenies with multiple homoplasy events. | Ravi Vijaya Satya, Amar Mukherjee, Gabriela Alexe, Laxmi Parida, Gyan Bhanot |
| 2006 | Semi-supervised analysis of gene expression profiles for lineage-specific development in the | Yuan (Alan) Qi, Patrycja E. Missiuro, Ashish Kapoor, Craig P. Hunter, Tommi S. Jaakkola, David K. Gifford, Hui Ge |
| 2006 | BaCelLo: a balanced subcellular localization predictor. | Andrea Pierleoni, Pier Luigi Martelli, Piero Fariselli, Rita Casadio |
| 2006 | Create and assess protein networks through molecular characteristics of individual proteins. | Yanay Ofran, Guy Yachdav, Eyal Mozes, Ta-tsen Soong, Rajesh Nair, Burkhard Rost |
| 2006 | Apples to apples: improving the performance of motif finders and their significance analysis in the Twilight Zone. | Patrick Ng, Niranjan Nagarajan, Neil Jones, Uri Keich |
| 2006 | Informative priors based on transcription factor structural class improve | Leelavati Narlikar, Raluca Gordn, Uwe Ohler, Alexander J. Hartemink |