| 2006 | Identification of metabolic units induced by environmental signals. | Jose C. Nacher, Jean-Marc Schwartz, Minoru Kanehisa, Tatsuya Akutsu |
| 2006 | An equilibrium partitioning model connecting gene expression and | Joe Mellor, Charles DeLisi |
| 2006 | An experimental metagenome data management and analysis system. | Victor M. Markowitz, Natalia Ivanova, Krishna Palaniappan, Ernest Szeto, Frank Korzeniewski, Athanasios Lykidis, Iain Anderson, Konstantinos Mavrommatis, Victor Kunin, Hctor Garca Martn, Inna Dubchak, Philip Hugenholtz, Nikos Kyrpides |
| 2006 | Efficient identification of DNA hybridization partners in a sequence database. | Tobias P. Mann, William Stafford Noble |
| 2006 | Indel seeds for homology search. | Denise Y. F. Mak, Yevgeniy Gelfand, Gary Benson |
| 2006 | Mutation parameters from DNA sequence data using graph theoretic measures on lineage trees. | Reuma Magori-Cohen, Yoram Louzoun, Steven H. Kleinstein |
| 2006 | Quantification of transcription factor expression from Arabidopsis images. | Daniel L. Mace, Jiyoung Lee, Richard W. Twigg, Juliette Colinas, Philip N. Benfey, Uwe Ohler |
| 2006 | Identifying cycling genes by combining sequence homology and expression data. | Yong Lu, Ronald Rosenfeld, Ziv Bar-Joseph |
| 2006 | Peptide sequence tag-based blind identification of post-translational modifications with point process model. | Chunmei Liu, Bo Yan, Yinglei Song, Ying Xu, Liming Cai |
| 2006 | Interpreting anonymous DNA samples from mass disasters - probabilistic forensic inference using genetic markers. | Tien-ho Lin, Eugene W. Myers, Eric P. Xing |
| 2006 | BNTagger: improved tagging SNP selection using Bayesian networks. | Phil Hyoun Lee, Hagit Shatkay |
| 2006 | A combinatorial pattern discovery approach for the prediction of membrane dipping (re-entrant) loops. | Gorka Lasso, John F. Antoniw, Jonathan G. L. Mullins |
| 2006 | Finding novel genes in bacterial communities isolated from the environment. | Lutz Krause, Naryttza N. Diaz, Daniela Bartels, Robert A. Edwards, Alfred Phler, Forest Rohwer, Folker Meyer, Jens Stoye |
| 2006 | A decompositional approach to parameter estimation in pathway modeling: a case study of the Akt and MAPK pathways and their crosstalk. | Geoffrey Koh, Huey Fern Carol Teong, Marie-Vronique Clment, David Hsu, P. S. Thiagarajan |
| 2006 | Annotating proteins by mining protein interaction networks. | Mustafa Kirac, Gultekin zsoyoglu, Jiong Yang |
| 2006 | Rapid knot detection and application to protein structure prediction. | Firas Khatib, Matthew T. Weirauch, Carol A. Rohl |
| 2006 | Distance based algorithms for small biomolecule classification and structural similarity search. | Emre Karako, Artem Cherkasov, Sleyman Cenk Sahinalp |
| 2006 | Comparative genomics reveals unusually long motifs in mammalian genomes. | Neil Christopher Jones, Pavel A. Pevzner |
| 2006 | Learning MHC I - peptide binding. | Nebojsa Jojic, Manuel Reyes-Gomez, David Heckerman, Carl Myers Kadie, Ora Schueler-Furman |
| 2006 | Finding the evidence for protein-protein interactions from PubMed abstracts. | Hyunchul Jang, Jaesoo Lim, Joon-Ho Lim, Soo-Jun Park, Kyu-Chul Lee, Seon-Hee Park |
| 2006 | Modelling sequential protein folding under kinetic control. | Fabien P. E. Huard, Charlotte M. Deane, Graham R. Wood |
| 2006 | Hairpins in a Haystack: recognizing microRNA precursors in comparative genomics data. | Jana Hertel, Peter F. Stadler |
| 2006 | ZPRED: Predicting the distance to the membrane center for residues in alpha-helical membrane proteins. | Erik Granseth, Hkan Viklund, Arne Elofsson |
| 2006 | Predicting the prognosis of breast cancer by integrating clinical and microarray data with Bayesian networks. | Olivier Gevaert, Frank De Smet, Dirk Timmerman, Yves Moreau, Bart De Moor |
| 2006 | Context-specific independence mixture modeling for positional weight matrices. | Benjamin Georgi, Alexander Schliep |