| 2021 | BIBE | An FPGA-Based Data Pre-Processing Architecture to Accelerate De-Novo Genome Assembly. | Georgios Galanos, Pavlos Malakonakis, Apostolos Dollas |
| 2021 | BIBE | An FPGA-Based System for Video Processing to Detect Holes in Aquaculture Nets. | Theofilos Zacheilas, Konstantia Moirogiorgou, Nikos Papandroulakis, Euripides Sotiriades, Michalis E. Zervakis, Apostolos Dollas |
| 2020 | BIBE | Exploring Modern FPGA Platforms for Faster Phylogeny Reconstruction with RAxML. | Pavlos Malakonakis, Andreas Brokalakis, Nikolaos Alachiotis, Euripides Sotiriades, Apostolos Dollas |
| 2019 | FPL | Data Stream Statistics Over Sliding Windows: How to Summarize 150 Million Updates Per Second on a Single Node. | Grigorios Chrysos, Odysseas Papapetrou, Dionisios N. Pnevmatikatos, Apostolos Dollas, Minos N. Garofalakis |
| 2019 | FPL | An FPGA-Based Architecture to Simulate Cellular Automata with Large Neighborhoods in Real Time. | Nikolaos Kyparissas, Apostolos Dollas |
| 2019 | ICASSP | Efficient Convolutional Neural Network Weight Compression for Space Data Classification on Multi-fpga Platforms. | George Pitsis, Grigorios Tsagkatakis, Christos Kozanitis, Ioannis Kalomoiris, Aggelos Ioannou, Apostolos Dollas, Manolis G. H. Katevenis, Panagiotis Tsakalides |
| 2018 | ICIN | An open-source extendable, highly-accurate and security aware simulator for cloud applications. | Andreas Brokalakis, Nikolaos Tampouratzis, Antonios Nikitakis, Ioannis Papaefstathiou, Stamatis Andrianakis, Apostolos Dollas, Marco Paracchini, Marco Marcon, Danilo Pietro Pau, Emanuele Plebani |
| 2017 | DCOSS | An Open-Source Extendable, Highly-Accurate and Security Aware CPS Simulator. | Andreas Brokalakis, Nikolaos Tampouratzis, Antonis Nikitakis, Stamatis Andrianakis, Ioannis Papaefstathiou, Apostolos Dollas |
| 2017 | FCCM | An Architecture for the Acceleration of a Hybrid Leaky Integrate and Fire SNN on the Convey HC-2ex FPGA-Based Processor. | Emmanouil Kousanakis, Apostolos Dollas, Euripides Sotiriades, Ioannis Papaefstathiou, Dionisios N. Pnevmatikatos, Athanasia Papoutsi, Panagiotis C. Petrantonakis, Panayiota Poirazi, Spyridon Chavlis, George Kastellakis |
| 2017 | FPL | Deploying FPGAs to future-proof genome-wide analyses based on linkage disequilibrium. | Dimitrios Bozikas, Nikolaos Alachiotis, Pavlos Pavlidis, Euripides Sotiriades, Apostolos Dollas |
| 2017 | FPL | A generic high throughput architecture for stream processing. | Christos Rousopoulos, Ektoras Karandeinos, Grigorios Chrysos, Apostolos Dollas, Dionisios N. Pnevmatikatos |
| 2016 | EDBT | Leveraging Reconfigurable Computing in Distributed Real-time Computation Systems. | Apostolos Nydriotis, Pavlos Malakonakis, Nikos Pavlakis, Grigorios Chrysos, Ekaterini Ioannou, Euripides Sotiriades, Minos N. Garofalakis, Apostolos Dollas |
| 2016 | FPL | An FPGA-based high-throughput stream join architecture. | Charalabos Kritikakis, Grigorios Chrysos, Apostolos Dollas, Dionisios N. Pnevmatikatos |
| 2014 | FPL | HPC-gSpan: An FPGA-based parallel system for frequent subgraph mining. | Athanasios Stratikopoulos, Grigorios Chrysos, Ioannis Papaefstathiou, Apostolos Dollas |
| 2013 | BIBE | A low cost embedded real time 3D stereo matching system for surveillance applications. | Georgia Rematska, Kyprianos Papadimitriou, Apostolos Dollas |
| 2012 | BIBE | Opportunities from the use of FPGAs as platforms for bioinformatics algorithms. | Grigorios Chrysos, Euripides Sotiriades, Christos Rousopoulos, Apostolos Dollas, Agathoklis Papadopoulos, Ioannis Kirmitzoglou, Vasilis J. Promponas, Theocharis Theocharides, George Petihakis, Jacques Lagnel, Panagiotis Vavylis, George Kotoulas |
| 2012 | FPL | FPGA-based design and implementation of a multi-GBPS LDPC decoder. | Alexios Balatsoukas-Stimming, Apostolos Dollas |
| 2011 | FCCM | Architecture, Design, and Experimental Evaluation of a Lightfield Descriptor Depth Buffer Algorithm on Reconfigurable Logic and on a GPU. | Matina Lakka, Grigorios Chrysos, Ioannis Papaefstathiou, Apostolos Dollas |
| 2011 | FPL | Novel and Highly Efficient Reconfigurable Implementation of Data Mining Classification Tree. | Grigorios Chrysos, Panagiotis Dagritzikos, Ioannis Papaefstathiou, Apostolos Dollas |
| 2011 | FPL | Design of a High Switching Frequency FPGA-Based SPWM Generator for DC/AC Inverters. | Matina Lakka, Eftichios Koutroulis, Apostolos Dollas |
| 2011 | FPL | Exploitation of Parallel Search Space Evaluation with FPGAs in Combinatorial Problems: The Eternity II Case. | Pavlos Malakonakis, Apostolos Dollas |
| 2010 | FCCM | Combining Duplication, Partial Reconfiguration and Software for On-line Error Diagnosis and Recovery in SRAM-Based FPGAs. | Anargyros Ilias, Kyprianos Papadimitriou, Apostolos Dollas |
| 2010 | FPL | Reconfigurable Systems for the Zuker and Predator Algorithms for Secondary Structure Prediction of Genetic Data. | Miltiadis Smerdis, Panagiotis Dagritzikos, Grigorios Chrysos, Euripides Sotiriades, Apostolos Dollas |
| 2009 | FPL | A reconfigurable architecture for the Phylogenetic Likelihood Function. | Nikolaos Alachiotis, Alexandros Stamatakis, Euripides Sotiriades, Apostolos Dollas |
| 2009 | FPL | A FPGA based coprocessor for gene finding using Interpolated Markov Model (IMM). | Grigorios Chrysos, Euripides Sotiriades, Ioannis Papaefstathiou, Apostolos Dollas |
| 2009 | FPL | A self-reconfiguring architecture supporting multiple objective functions in genetic algorithms. | Charalampos Effraimidis, Kyprianos Papadimitriou, Apostolos Dollas, Ioannis Papaefstathiou |
| 2008 | FPL | Modeling recursion data structures for FPGA-based implementation. | Spyridon Ninos, Apostolos Dollas |
| 2008 | FPL | A reconfigurable accelerator for quantum computations. | Michail Zampetakis, Vasilis Samoladas, Apostolos Dollas |
| 2007 | FCCM | An Integrated Video Compression, Encryption and Information Hiding Architecture based on the SCAN Algorithm and the Stretch Technology. | Grigorios Chrysos, Apostolos Dollas, Nikolaos G. Bourbakis, J. Sukarno Mertoguno |
| 2007 | FCCM | Methodology and Experimental Setup for the Determination of System-level Dynamic Reconfiguration Overhead. | Kyprianos Papadimitriou, Antonis Anyfantis, Apostolos Dollas |
| 2007 | FCCM | Design Space Exploration for the BLAST Algorithm Implementation. | Euripides Sotiriades, Apostolos Dollas |
| 2006 | FCCM | Parrotfish: Task Distribution in a Low Cost Autonomous ad hoc Sensor Network through Dynamic Runtime Reconfiguration. | Dionissios Efstathiou, Konstantinos Kazakos, Apostolos Dollas |
| 2006 | FCCM | A Task Graph Approach for Efficient Exploitation of Reconfiguration in Dynamically Reconfigurable Systems. | Kyprianos Papademetriou, Apostolos Dollas |
| 2006 | FPL | Performance Evaluation of a Preloading Model in Dynamically Reconfigurable Processors. | Kyprianos Papademetriou, Apostolos Dollas |
| 2006 | RSP | Rapid Phototyping of a System-on-a-Chip for the BLAST Algorithm Implementation. | Euripides Sotiriades, Christos Kozanitis, Grigorios Chrysos, Apostolos Dollas |
| 2005 | FCCM | An Open TCP/IP Core for Reconfigurable Logic. | Apostolos Dollas, Ioannis Ermis, Iosif Koidis, Ioannis Zisis, Christopher Kachris |
| 2005 | FCCM | On Distributed Reconfigurable Systems: Open Problems and Some Initial Solutions. | Apostolos Dollas, Dionissios Efstathiou, Georgios Vernardos, Elias Polytarchos, Konstantinos Kazakos |
| 2005 | FCCM | An Architecture for Video Compression Based on the SCAN Algorithm. | H. Sofikitis, K. Roumpou, Apostolos Dollas, Nikolaos G. Bourbakis |
| 2004 | RSP | A Case Study on Rapid Prototyping of Hardware Systems: The Effect of CAD Tool Capabilities, Design Flows, and Design Styles. | Apostolos Dollas, Kyprianos Papademetriou, Euripides Sotiriades, Dimitrios Theodoropoulos, Iosif Koidis, George Vernardos |
| 2003 | FCCM | Performance Analysis of Fixed, Reconfigurable, and Custom Architectures for the SCAN Image and Video Encryption Algorithm. | Apostolos Dollas, Christopher Kachris, Nikolaos G. Bourbakis |
| 2003 | FCCM | A Second Generation Embedded Reconfigurable Input Device for Kinetically Challenged Persons. | Kyprianos Papademetriou, Apostolos Dollas, Stamatios N. Sotiropoulos |
| 2003 | RSP | A Universal Low Cost Run-Time and Programming Environment for Reconfigurable Computing. | Apostolos Dollas, Dionissios Efstathiou, Thomas Kyriakides |
| 2001 | FCCM | Architecture and Application of PLATO, A Reconfigurable Active Network Platform. | Apostolos Dollas, Dionisios N. Pnevmatikatos, Nikolaos Aslanides, Stamatios Kavvadias, Euripides Sotiriades, Sotirios Zogopoulos, Kyprianos Papademetriou, Grigorios Chrysos, Konstantinos Harteros, Emanouil Antonidakis, Nikolaos Petrakis |
| 2001 | FPL | A Reconfigurable Embedded Input Device for Kinetically Challenged Persons. | Apostolos Dollas, Kyprianos Papademetriou, Nikolaos Aslanides, Tom Kean |
| 2001 | RSP | Rapid Prototyping of a Reusable 4x4 Active ATM Switch Core with the PCI Pamette. | Apostolos Dollas, Nikolaos Aslanides, Stamatios Kavvadias, Euripides Sotiriades, Kyprianos Papademetriou, Dionisios N. Pnevmatikatos |
| 2000 | FCCM | Hardware-Software Codesign and Parallel Implementation of a Golomb Ruler Derivation Engine. | Euripides Sotiriades, Apostolos Dollas, Peter Athanas |
| 1998 | FCCM | Architecture and Design of GE1, a FCCM for Golomb Ruler Derivation. | Apostolos Dollas, Euripides Sotiriades, Apostolos Emmanouelides |
| 1998 | FCCM | General Purpose vs. Custom FCCM's: a Comparison of Splash2, Quickturn RPM, and GE1 for Golomb Ruler Derivation. | Apostolos Dollas, Euripides Sotiriades, Apostolos Emmanouelides, Lee House |
| 1995 | RSP | A case study of system synthesis with non-synthesizable components using extended VHDL. | J. D. Sterling Babcock, Apostolos Dollas |
| 1994 | FPL | FPGA Based Low Cost Generic Reusable Module for the Rapid Prototyping of Subsystems. | Apostolos Dollas, Brent Ward, J. D. Sterling Babcock |
| 1994 | RSP | Extended VHDL for the rapid prototyping of systems with synthesizable and nonsynthesizable subsystems. | John Daniel Sterling Babcock, Apostolos Dollas |
| 1992 | RSP | An evaluation of the Teamwork CASE environment for specifications capture of hardware systems. | Apostolos Dollas, Scott L. Crutchfield |
| 1991 | ICTAI | Knowledge based process scheduling on symmetric multiprocessors. | Philip J. Christopher, Apostolos Dollas |
| 1991 | RSP | Experimental results in rapid system prototyping with incomplete CAD tools and inexperienced designers. | Apostolos Dollas |
| 1990 | COMPSAC | Applying knowledge-based technology: trends and directions (Panel Session). | Mike P. Papazoglou, Bruce I. Blum, Nikolaos G. Bourbakis, Apostolos Dollas, J. G. Hughes, E. Knudsen, Timos K. Sellis |
| 1990 | ITC | An interactive environment for the transparent logic simulation and testing of integrated circuits. | Grant L. Castrodale, Apostolos Dollas, William T. Krakow |
| 1990 | RSP | Rapid system prototyping in academic laboratories of the 1990s. | Apostolos Dollas, V. Chi |
| 1989 | ICTAI | A knowledge-based environment for the integration of logical and physical testing of VLSI circuits. | Apostolos Dollas, Grant L. Castrodale, William T. Krakow |