| 2024 | ICPP | Parallelization of the Banded Needleman & Wunsch Algorithm on UPMEM PiM Architecture for Long DNA Sequence Alignment. | Meven Mognol, Dominique Lavenier, Julien Legriel |
| 2020 | WABI | A Graph-Theoretic Barcode Ordering Model for Linked-Reads. | Yoann Dufresne, Chen Sun, Pierre Marijon, Dominique Lavenier, Cdric Chauve, Rayan Chikhi |
| 2019 | DaWaK | Statistically Significant Discriminative Patterns Searching. | Hoang-Son Pham, Gwendal Virlet, Dominique Lavenier, Alexandre Termier |
| 2013 | FCCM | FAssem: FPGA Based Acceleration of De Novo Genome Assembly. | B. Sharat Chandra Varma, Kolin Paul, M. Balakrishnan, Dominique Lavenier |
| 2013 | PPAM | Parallel Seed-Based Approach to Protein Structure Similarity Detection. | Guillaume Chapuis, Mathilde Le Boudic-Jamin, Rumen Andonov, Hristo N. Djidjev, Dominique Lavenier |
| 2011 | PPAM | Parallel and Memory-Efficient Reads Indexing for Genome Assembly. | Guillaume Chapuis, Rayan Chikhi, Dominique Lavenier |
| 2011 | WABI | Localized Genome Assembly from Reads to Scaffolds: Practical Traversal of the Paired String Graph. | Rayan Chikhi, Dominique Lavenier |
| 2009 | ICCS | GPU Accelerated RNA Folding Algorithm. | Guillaume Rizk, Dominique Lavenier |
| 2008 | PDCAT | Efficient Parallelization of a Protein Sequence Comparison Algorithm on Manycore Architecture. | Xiaochun Ye, Van Hoa Nguyen, Dominique Lavenier, Dongrui Fan |
| 2007 | PPAM | Protein Similarity Search with Subset Seeds on a Dedicated Reconfigurable Hardware. | Pierre Peterlongo, Laurent No, Dominique Lavenier, Gilles Georges, Julien Jacques, Gregory Kucherov, Mathieu Giraud |
| 2001 | FCCM | Mutable Functional Units: Initial Results. | Yan Solihin, Kirk W. Cameron, Yong Luo, Dominique Lavenier, Maya B. Gokhale |
| 2001 | FPGA | Evaluation of the streams-C C-to-FPGA compiler: an applications perspective. | Janette Frigo, Maya B. Gokhale, Dominique Lavenier |
| 2001 | FPL | Placing, Routing, and Editing Virtual FPGAs. | Loc Lagadec, Dominique Lavenier, Erwan Fabiani, Bernard Pottier |
| 2001 | ICCD | Mutable Functional Units and Their Applications on Microprocessors. | Yan Solihin, Kirk W. Cameron, Yong Luo, Dominique Lavenier, Maya B. Gokhale |
| 2000 | FPL | Placement of Linear Arrays. | Erwan Fabiani, Dominique Lavenier |
| 1998 | FPL | Computing Goldbach Partitions Using Pseudo-random Bit Generator Operators on a FPFA Systolic Array. | Dominique Lavenier, Yannick Saouter |
| 1996 | EuroPar | Design and Implementation of a Parallel Architecture for Biological Sequence Comparison. | Pascale Guerdoux-Jamet, Dominique Lavenier, Charles Wagner, Patrice Quinton |
| 1994 | RSP | From behavioral to RTL models: an approach. | Dominique Lavenier, Roderick McConnell |
| 1991 | CCC | Experience in the design of paralle processor arrays. | Patrice Frison, Dominique Lavenier |