| 2025 | CLUSTER | PIAR: Path-Improved Adaptive Routing for Dragonfly Networks. | Zhenghao Wang, Qiang Wang, Mingche Lai, Jiaqing Xu, Jinbo Xu, Min Xie, Guo Chen |
| 2025 | ICML | Retrieval Augmented Zero-Shot Enzyme Generation for Specified Substrate. | Jiahe Du, Kaixiong Zhou, Xinyu Hong, Zhaozhuo Xu, Jinbo Xu, Xiao Huang |
| 2025 | KDD | Surface-based Molecular Design with Multi-modal Flow Matching. | Fang Wu, Zhengyuan Zhou, Shuting Jin, Xiangxiang Zeng, Jure Leskovec, Jinbo Xu |
| 2024 | ISPA | Collective Communication Acceleration Architecture for Reduce Operation with Long Operands Based on Efficient Data Access and Reconfigurable On-Chip Buffer. | Jinbo Xu, Zhengbin Pang, Yi Dai |
| 2023 | HCI | Research on the Aesthetic Connotation of New Media Ink Painting Art Based on Grounded Theory. | Wenyi Xu, Jinbo Xu, Zhipeng Zhang |
| 2022 | HCI | Analysis of the Attainable Design Paths of Non-heritage Cultural Tourism Immersion Experience - An Example of the Tujia City Living Room Project in Enshi Prefecture. | Jinbo Xu, Yueqing Wei |
| 2021 | ICML | XOR-CD: Linearly Convergent Constrained Structure Generation. | Fan Ding, Jianzhu Ma, Jinbo Xu, Yexiang Xue |
| 2021 | UAI | PALM: Probabilistic area loss Minimization for Protein Sequence Alignment. | Fan Ding, Nan Jiang, Jianzhu Ma, Jian Peng, Jinbo Xu, Yexiang Xue |
| 2019 | RECOMB | stance-Based Protein Folding Powered by Deep Learning. | Jinbo Xu |
| 2018 | RECOMB | Deep Learning Reveals Many More Inter-protein Residue-Residue Contacts than Direct Coupling Analysis. | Tianming Zhou, Sheng Wang, Jinbo Xu |
| 2017 | RECOMB | Folding Membrane Proteins by Deep Transfer Learning. | Zhen Li, Sheng Wang, Yizhou Yu, Jinbo Xu |
| 2016 | RECOMB | Joint Alignment of Multiple Protein-Protein Interaction Networks via Convex Optimization. | Somaye Hashemifar, Qixing Huang, Jinbo Xu |
| 2015 | AISTATS | Inferring Block Structure of Graphical Models in Exponential Families. | Siqi Sun, Hai Wang, Jinbo Xu |
| 2015 | ICML | Learning Scale-Free Networks by Dynamic Node Specific Degree Prior. | Qingming Tang, Siqi Sun, Jinbo Xu |
| 2015 | ICMLC | Classification of Tiangong-1 hyperspectral remote sensing image via contextual sparse coding. | Qi Lv, Yong Dou, Xin Niu, Jiaqing Xu, Jinbo Xu |
| 2015 | IPCCC | A low-latency fine-grained dynamic shared cache management scheme for chip multi-processor. | Jinbo Xu, Weixia Xu, Zhengbin Pang |
| 2015 | RECOMB | Protein Contact Prediction by Integrating Joint Evolutionary Coupling Analysis and Supervised Learning. | Jianzhu Ma, Sheng Wang, Zhiyong Wang, Jinbo Xu |
| 2015 | UAI | Structure Learning Constrained by Node-Specific Degree Distribution. | Jianzhu Ma, Feng Zhao, Jinbo Xu |
| 2014 | AISTATS | Adaptive Variable Clustering in Gaussian Graphical Models. | Siqi Sun, Yuancheng Zhu, Jinbo Xu |
| 2014 | IPCCC | Low-latency last-level cache structure based on grouped cores in Chip Multi-Processor. | Jinbo Xu, Weixia Xu, Kefei Wang, Zhengbin Pang |
| 2014 | RECOMB | MRFalign: Protein Homology Detection through Alignment of Markov Random Fields. | Jianzhu Ma, Sheng Wang, Zhiyong Wang, Jinbo Xu |
| 2013 | AISTATS | Estimating the Partition Function of Graphical Models Using Langevin Importance Sampling. | Jianzhu Ma, Jian Peng, Sheng Wang, Jinbo Xu |
| 2013 | HPCC | Direction-Optimizing Breadth-First Search on CPU-GPU Heterogeneous Platforms. | Dan Zou, Yong Dou, Qiang Wang, Jinbo Xu, Baofeng Li |
| 2011 | HPCC | A Parallel Processing Scheme for Large-Size Sliding-Window Applications. | Weixia Xu, Jinbo Xu, Zhengbin Pang |
| 2009 | FPL | FPGA accelerating three QR decomposition algorithms in the unified pipelined framework. | Yong Dou, Jie Zhou, Xiaoyang Chen, Yuanwu Lei, Jinbo Xu |
| 2009 | RECOMB | Boosting Protein Threading Accuracy. | Jian Peng, Jinbo Xu |
| 2009 | RECOMB | A Probabilistic Graphical Model for Ab Initio Folding. | Feng Zhao, Jian Peng, Joe DeBartolo, Karl F. Freed, Tobin R. Sosnick, Jinbo Xu |
| 2008 | CPM | Finding Largest Well-Predicted Subset of Protein Structure Models. | Shuai Cheng Li, Dongbo Bu, Jinbo Xu, Ming Li |
| 2008 | HPCC | Double Precision Hybrid-Mode Floating-Point FPGA CORDIC Co-processor. | Jie Zhou, Yong Dou, Yuanwu Lei, Jinbo Xu, Yazhuo Dong |
| 2008 | ISMB | Designing succinct structural alphabets. | Shuai Cheng Li, Dongbo Bu, Xin Gao, Jinbo Xu, Ming Li |
| 2008 | PSB | Global Alignment of Multiple Protein Interaction Networks. | Rohit Singh, Jinbo Xu, Bonnie Berger |
| 2008 | RECOMB | Rapid and Accurate Protein Side Chain Prediction with Local Backbone Information. | Jing Zhang, Xin Gao, Jinbo Xu, Ming Li |
| 2008 | SODA | Graph algorithms for biological systems analysis. | Bonnie Berger, Rohit Singh, Jinbo Xu |
| 2007 | CPM | Finding Compact Structural Motifs. | Jianbo Qian, Shuai Cheng Li, Dongbo Bu, Ming Li, Jinbo Xu |
| 2007 | DSD | FPGA Accelerating Algorithms of Active Shape Model in People Tracking Applications. | Jinbo Xu, Yong Dou, Junfeng Li, Xingming Zhou, Qiang Dou |
| 2007 | RECOMB | Pairwise Global Alignment of Protein Interaction Networks by Matching Neighborhood Topology. | Rohit Singh, Jinbo Xu, Bonnie Berger |
| 2006 | PSB | Struct2Net: Integrating Structure into Protein-Protein Interaction Prediction. | Rohit Singh, Jinbo Xu, Bonnie Berger |
| 2006 | RECOMB | A Parameterized Algorithm for Protein Structure Alignment. | Jinbo Xu, Feng Jiao, Bonnie Berger |
| 2005 | APBC | Consensus fold recognition by predicted model quality. | Jinbo Xu, Libo Yu, Ming Li |
| 2005 | PSB | Discovering Sequence-Structure Motifs from Protein Segments and Two Applications. | Thomas Tang, Jinbo Xu, Ming Li |
| 2005 | RECOMB | Rapid Protein Side-Chain Packing via Tree Decomposition. | Jinbo Xu |
| 2004 | CPM | Optimizing Multiple Spaced Seeds for Homology Search. | Jinbo Xu, Daniel G. Brown, Ming Li, Bin Ma |
| 2003 | PSB | Protein Threading by Linear Programming. | Jinbo Xu, Ming Li, Guo-Hui Lin, Dongsup Kim, Ying Xu |
| 2003 | WABI | Speedup LP Approach to Protein Threading via Graph Reduction. | Jinbo Xu |