| 2006 | A method to integrate, assess and characterize the protein-protein interactions. | Fa Zhang, Lin Xu, Jingchun Chen, Zhiyong Liu, Bo Yuan |
| 2006 | A Hidden Markov Model Approach to Identifying HTH Motifs Using Protein Sequence and Predicted Solvent Accessibility. | Changhui Yan, Jing Hu |
| 2006 | A Comparative Study on Feature Extraction from Protein Sequences for Subcellular Localization Prediction. | Wen-Yun Yang, Bao-Liang Lu, Yang Yang |
| 2006 | G Protein-Coupled Receptor Classification at the Subfamily Level with Probabilistic Suffix Tree. | Jingyi Yang, Jitender S. Deogun |
| 2006 | A profile-based protein sequence alignment algorithm for a domain clustering database. | Lin Xu, Fa Zhang, Zhiyong Liu |
| 2006 | Analysis of Thermodynamic Models and Performance in RnaPredict - An Evolutionary Algorithm for RNA Folding. | Kay C. Wiese, Andrew Hendriks, Alain Deschnes |
| 2006 | Inferring functional coupling of proteins using the Evolutionary Bond Energy Algorithm. | Ryosuke Watanabe, Edgar E. Vallejo, Enrique Morett |
| 2006 | A Bayesian approach to pairwise RNA Secondary Structure Alignment. | Zhuozhi Wang, Elisabeth R. M. Tillier |
| 2006 | SARNA-Predict: A Simulated Annealing Algorithm for RNA Secondary Structure Prediction. | Herbert H. Tsang, Kay C. Wiese |
| 2006 | Machine Learning in Basecalling Decoding Trace Peak Behaviour. | David Thornley, Stavros Petridis |
| 2006 | P-found: The Protein Folding and Unfolding Simulation Repository. | Cndida G. Silva, Vitaliy Ostropytskyy, Nuno Loureiro-Ferreira, Daniel P. Berrar, Martin T. Swain, Werner Dubitzky, Rui M. M. Brito |
| 2006 | Bootstrap Inference with Neural-Network Modeling for Gene-Disease Association Testing. | Nelli Shimko, Marie-Pierre Dub |
| 2006 | A Model-Free Greedy Gene Selection for Microarray Sample Class Prediction. | Yi Shi, Zhipeng Cai, Lizhe Xu, Wei Ren, Randy Goebel, Guohui Lin |
| 2006 | A Fuzzy Kohonen SOM Implementation and Clustering of Bio-active Compound Structures for Drug Discovery. | Jehan Zeb Shah, Naomie Salim |
| 2006 | Filtration and Depth Annotation Improve Non-linear Projection for RNA Motif Discovery. | Justin Schonfeld, Dan Ashlock |
| 2006 | Inference of Gene Regulatory Networks from Time Course Gene Expression Data Using Neural Networks and Swarm Intelligence. | Habtom W. Ressom, Yuji Zhang, Jianhua Xuan, Yue Joseph Wang, Robert Clarke |
| 2006 | Biomarker Identification and Rule Extraction from Mass Spectral Serum Profiles. | Habtom W. Ressom, Rency S. Varghese, Eduard Orvisky, Steven K. Drake, Glen L. Hortin, Mohamed Abdel-Hamid, Christopher A. Loffredo, Radoslav Goldman |
| 2006 | Feature Selection using a Random Forests Classifier for the Integrated Analysis of Multiple Data Types. | David M. Reif, Alison A. Motsinger, Brett A. McKinney, James E. Crowe Jr., Jason H. Moore |
| 2006 | Identification of non random motifs in loops using a structural alphabet. | Leslie Regad, Juliette Martin, Anne-Claude Camproux |
| 2006 | Causal Modeling of Gene Regulatory Network. | Ramesh Ram, Madhu Chetty, Trevor I. Dix |
| 2006 | Gene Ontology Driven Feature Selection from Microarray Gene Expression Data. | Jianlong Qi, Jian Tang |
| 2006 | Classification of Scleroderma and Normal Biopsy Data and Identification of Possible Biomarkers of the Disease. | Topon Kumar Paul, Hitoshi Iba |
| 2006 | Classification of Relapse Ovarian Cancer on MALDI-TOF Mass Spectrometry Data. | Jung Hun Oh, Animesh Nandi, Prem Gurnani, Lynne Knowles, John Schorge, Kevin P. Rosenblatt, Jean Gao |
| 2006 | Understanding the Evolutionary Process of Grammatical Evolution Neural Networks for Feature Selection in Genetic Epidemiology. | Alison A. Motsinger, David M. Reif, Scott M. Dudek, Marylyn D. Ritchie |
| 2006 | A Fast Multivariate Feature-Selection/Classification Approach for Prediction of Therapy Response in Multiple Sclerosis. | Sara Mostafavi, Sergio Baranzini, Jorge Oksenberg, Parvin Mousavi |