| 2005 | Preliminary Results for GAMI: A Genetic Algorithms Approach to Motif Inference. | Clare Bates Congdon, Charles Fizer, Noah W. Smith, H. Rex Gaskins, Joseph C. Aman, Gerardo M. Nava, Carolyn J. Mattingly |
| 2005 | GEMSCORE: A New Empirical Energy Function for Protein Folding. | Yi-Yuan Chiu, Jenn-Kang Hwang, Jinn-Moon Yang |
| 2005 | Identification of Functional RNA Genes Using Evolved Neural Networks. | Mars Cheung, Gary B. Fogel |
| 2005 | Biclustering of Gene Expression Data Using Genetic Algorithm. | Anupam Chakraborty, Hitashyam Maka |
| 2005 | An Architecture Combining Bayesian segmentation and Neural Network Ensembles for Protein Secondary Structure Prediction. | Niranjan P. Bidargaddi, Madhu Chetty, Joarder Kamruzzaman |
| 2005 | Fuzzy Profile Hidden Markov Models for Protein Sequence Analysis. | Niranjan P. Bidargaddi, Madhu Chetty, Joarder Kamruzzaman |
| 2005 | Handling Data Sparseness in Gene Network Reconstruction. | George Barreto Bezerra, Tiago V. Barra, Fernando J. Von Zuben, Leandro Nunes de Castro |
| 2005 | Predicting Structural Disruption of Proteins Caused by Crossover (based on Amino Acid Sequence). | Denis C. Bauer, Mikael Bodn, Ricarda Thier, Zheng Yuan |
| 2005 | Selection of Genetically Diverse Recombinant Inbreds with an Ordered Gene Evolutionary Algorithm. | Daniel A. Ashlock, Ruth Swanson, Patrick S. Schnable |
| 2005 | Depth Annotation of RNA Folds for Secondary Structure Motif Search. | Daniel A. Ashlock, Justin Schonfeld |
| 2005 | A Novel Variation Operator for More Rapid Evolution of DNA Error Correcting Codes. | Daniel A. Ashlock, Sheridan K. Houghten |
| 2005 | Multiple Sequence Alignment Containing a Sequence of Regular Expressions. | Abdullah N. Arslan |
| 2005 | Neuro-fuzzy Prediction of Biological Activity and Rule Extraction for HIV-1 Protease Inhibitors. | Razvan Andonie, Levente Fabry-Asztalos, Catharine Collar, Sarah Abdul-Wahid, Nicholas Salim |
| 2005 | Using a Bayesian Posterior Density in the Design of Perturbation Experiments. | Anthony Almudevar, Peter Salzman |
| 2004 | Factoring tertiary classification into binary classification improves neural network for protein secondary structure prediction. | Wei Zhong, Gulsah Altun, Hae-Jin Hu, Robert W. Harrison, Phang C. Tai, Yi Pan |
| 2004 | Analyzing fuzzy partitions of Saccharomyces cerevisiae cell-cycle gene expression data by Bayesian validation method. | Si-Ho Yoo, Chanho Park, Sung-Bae Cho |
| 2004 | Self-adaptive evolutionary algorithm based methods for quantification in metabolic systems. | Jing Yang, Sarawan Wongsa, Visakan Kadirkamanathan, Stephen A. Billings, Phillip C. Wright |
| 2004 | Graphical approach for motif recognition in DNA sequences. | Xiao Yang, Jagath C. Rajapakse |
| 2004 | A | Xiao-hua Xu, Ling Chen, Yixin Chen |
| 2004 | Gene expression correlation and gene ontology-based similarity: an assessment of quantitative relationships. | Haiying Wang, Francisco Azuaje, Olivier Bodenreider, Joaqun Dopazo |
| 2004 | A comparison of sequence alignment algorithms for measuring secondary structure similarity. | L. Gwenn Volkert, Deborah Stoffer |
| 2004 | An efficient method for fuzzy identification of regulatory events in gene expression time series data. | L. Gwenn Volkert, Nawar Malhis |
| 2004 | Granular support vector machines for medical binary classification problems. | Yuchun Tang, Bo Jin, Yi Sun, Yan-Qing Zhang |
| 2004 | A memetic clustering algorithm for the functional partition of genes based on the gene ontology. | Nora Speer, Christian Spieth, Andreas Zell |
| 2004 | Protein family classification using structural and sequence information. | Scott F. Smith |