| 2004 | A Clocked DNA-Based Replicator. | Bernard Yurke, David Y. Zhang |
| 2004 | Design of an Autonomous DNA Nanomechanical Device Capable of Universal Computation and Universal Translational Motion. | Peng Yin, Andrew J. Turberfield, Sudheer Sahu, John H. Reif |
| 2004 | Designs of Autonomous Unidirectional Walking DNA Devices. | Peng Yin, Andrew J. Turberfield, John H. Reif |
| 2004 | An Inexpensive LED-Based Fluorometer Used to Study a Hairpin-Based DNA Nanomachine. | Hanwen Yan |
| 2004 | A Design for Cellular Evolutionary Computation by Using Bacteria. | Kenichi Wakabayashi, Masayuki Yamamura |
| 2004 | Combinatorial Aspects of Minimal DNA Expressions. | Rudy van Vliet, Hendrik Jan Hoogeboom, Grzegorz Rozenberg |
| 2004 | Aqueous Computing with DNA Hairpin-Based RAM. | Naoto Takahashi, Atsushi Kameda, Masahito Yamamoto, Azuma Ohuchi |
| 2004 | Complexity of Self-assembled Shapes. | David Soloveichik, Erik Winfree |
| 2004 | DNA Hybridization Catalysts and Catalyst Circuits. | Georg Seelig, Bernard Yurke, Erik Winfree |
| 2004 | Programmable Control of Nucleation for Algorithmic Self-assembly. | Rebecca Schulman, Erik Winfree |
| 2004 | Toward "Wet" Implementation of Genetic Algorithm for Protein Engineering. | Kensaku Sakamoto, Masayuki Yamamura, Hiroshi Someya |
| 2004 | Compact Error-Resilient Computational DNA Tiling Assemblies. | John H. Reif, Sudheer Sahu, Peng Yin |
| 2004 | The Capacity of DNA for Information Encoding. | Vinhthuy T. Phan, Max H. Garzon |
| 2004 | From Cells to Computers: Membrane Computing - A Quick Overview. | Gheorghe Paun |
| 2004 | Methods for Manipulating DNA Molecules in a Micrometer Scale Using Optical Techniques. | Yusuke Ogura, Takashi Kawakami, Fumika Sumiyama, Satoru Irie, Akira Suyama, Jun Tanida |
| 2004 | A Programmable Molecular Computer in Microreactors. | Danny van Noort |
| 2004 | Building the Components for a Biomolecular Computer. | Clint Morgan, Darko Stefanovic, Cristopher Moore, Milan N. Stojanovic |
| 2004 | Accepting Hybrid Networks of Evolutionary Processors. | Maurice Margenstern, Victor Mitrana, Mario J. Prez-Jimnez |
| 2004 | Partial Words for DNA Coding. | Peter Leupold |
| 2004 | Efficient Initial Pool Generation for Weighted Graph Problems Using Parallel Overlap Assembly. | Ji Youn Lee, Hee-Woong Lim, Suk-In Yoo, Byoung-Tak Zhang, Tai Hyun Park |
| 2004 | Minimum Basin Algorithm: An Effective Analysis Technique for DNA Energy Landscapes. | Mitsuhiro Kubota, Masami Hagiya |
| 2004 | Testing Structure Freeness of Regular Sets of Biomolecular Sequences. | Satoshi Kobayashi |
| 2004 | Preventing Undesirable Bonds Between DNA Codewords. | Lila Kari, Stavros Konstantinidis, Petr Sosk |
| 2004 | Bond-Free Languages: Formalizations, Maximality and Construction Methods. | Lila Kari, Stavros Konstantinidis, Petr Sosk |
| 2004 | Application of Mismatch Detection Methods in DNA Computing. | Christiaan V. Henkel, Grzegorz Rozenberg, Herman P. Spaink |