| 2004 | Splicing Systems for Universal Turing Machines. | Tero Harju, Maurice Margenstern |
| 2004 | Parallelism in Gene Assembly. | Tero Harju, Chang Li, Ion Petre, Grzegorz Rozenberg |
| 2004 | A Method of Error Suppression for Self-assembling DNA Tiles. | Kenichi Fujibayashi, Satoshi Murata |
| 2004 | DNA Extraction by XPCR. | Giuditta Franco, Cinzia Giagulli, Carlo Laudanna, Vincenzo Manca |
| 2004 | A Weighted Insertion-Deletion Stacked Pair Thermodynamic Metric for DNA Codes. | Arkadii G. D'yachkov, Anthony J. Macula, Wendy K. Pogozelski, Thomas E. Renz, Vyacheslav V. Rykov, David C. Torney |
| 2004 | Using Automated Reasoning Systems on Molecular Computing. | Carmen Graciani Daz, Mario J. Prez-Jimnez |
| 2004 | On the Computational Complexity of P Automata. | Erzsbet Csuhaj-Varj, Oscar H. Ibarra, Gyrgy Vaszil |
| 2004 | Error Free Self-assembly Using Error Prone Tiles. | Ho-Lin Chen, Ashish Goel |
| 2004 | Characterization of Non-crosshybridizing DNA Oligonucleotides Manufactured | Junghuei Chen, Russell J. Deaton, Max H. Garzon, Jin Woo Kim, David Harlan Wood, Hong Bi, Dylan Carpenter, Yu-Zhen Wang |
| 2004 | Biomolecular Implementation of Computing Devices with Unbounded Memory. | Matteo Cavaliere, Natasa Jonoska, Sivan Yogev, Ron Piran, Ehud Keinan, Nadrian C. Seeman |
| 2004 | Computing Beyond the Turing Limit Using the H Systems. | Cezar Cmpeanu, Andrei Paun |
| 2004 | DNA-Based Computation Times. | Yuliy M. Baryshnikov, Edward G. Coffman Jr., Petar Momcilovic |
| 2004 | Computing by Observing Bio-systems: The Case of Sticker Systems. | Artiom Alhazov, Matteo Cavaliere |
| 2003 | Proofreading Tile Sets: Error Correction for Algorithmic Self-Assembly. | Erik Winfree, Renat Bekbolatov |
| 2003 | Chemical Switching and Molecular Logic in Fluorescent-Labeled M-DNA. | Shawn D. Wettig, Grant A. Bare, Ryan J. S. Skinner, Jeremy S. Lee |
| 2003 | Analyzing Secondary Structure Transition Paths of DNA/RNA Molecules. | Hiroki Uejima, Masami Hagiya |
| 2003 | Secondary Structure Design of Multi-state DNA Machines Based on Sequential Structure Transitions. | Hiroki Uejima, Masami Hagiya |
| 2003 | Nearest-Neighbor Thermodynamics of DNA Sequences with Single Bulge Loo. | Fumiaki Tanaka, Atsushi Kameda, Masahito Yamamoto, Azuma Ohuchi |
| 2003 | One Dimensional Boundaries for DNA Tile Self-Assembly. | Rebecca Schulman, Shaun Lee, Nick Papadakis, Erik Winfree |
| 2003 | In Vitro Translation-Based Computations. | Yasubumi Sakakibara, Takahiro Hohsaka |
| 2003 | Parallel Translation of DNA Clusters by VCSEL Array Trapping and Temperature Control with Laser Illumination. | Yusuke Ogura, Takashi Kawakami, Fumika Sumiyama, Akira Suyama, Jun Tanida |
| 2003 | Towards a Re-programmable DNA Computer. | Danny van Noort, Laura F. Landweber |
| 2003 | Autonomous Biomolecular Computer Modeled after Retroviral Replication. | Nao Nitta, Akira Suyama |
| 2003 | Word Design for Molecular Computing: A Survey. | Giancarlo Mauri, Claudio Ferretti |
| 2003 | Time-Varying Distributed H Systems with Parallel Computations: The Problem Is Solved. | Maurice Margenstern, Yurii Rogozhin, Sergey Verlan |