| 2001 | PNA-mediated Whiplash PCR. | John A. Rose, Russell J. Deaton, Masami Hagiya, Akira Suyama |
| 2001 | Experimental Construction of Very Large Scale DNA Databases with Associative Search Capability. | John H. Reif, Thomas H. LaBean, Michael Pirrung, Vipul S. Rana, Bo Guo, Carl Kingsford, Gene S. Wickham |
| 2001 | Solving Knapsack Problems in a Sticker Based Model. | Mario J. Prez-Jimnez, Fernando Sancho-Caparrini |
| 2001 | Cascadable Hybridisation Transfer of Specific DNA between Microreactor Selection Modules. | Robert Penchovsky, John S. McCaskill |
| 2001 | On P Systems with Global Rules. | Andrei Paun |
| 2001 | DNA Computing in Microreactors. | Danny van Noort, Frank-Ulrich Gast, John S. McCaskill |
| 2001 | DNA Scissors. | James C. Mitchell, Bernard Yurke |
| 2001 | A Universal Time-Varying Distributed H System of Degree 1. | Maurice Margenstern, Yurii Rogozhin |
| 2001 | Computing with Membranes: Variants with an Enhanced Membrane Handling. | Maurice Margenstern, Carlos Martn-Vide, Gheorghe Paun |
| 2001 | A Clause String DNA Algorithm for SAT. | Vincenzo Manca, Claudio Zandron |
| 2001 | Insertion-Deletion P Systems. | Shankara Narayanan Krishna, Raghavan Rama |
| 2001 | Experimental Conformation of the Basic Principles of Length-only Discrimination. | Yevgenia Khodor, Julia Khodor, Thomas F. Knight Jr. |
| 2001 | Programmed Mutagenesis Is a Universal Model of Computation. | Julia Khodor, David K. Gifford |
| 2001 | Towards Optimization of PCR Protocol in DNA Computing. | Satoshi Kashiwamura, Masashi Nakatsugawa, Masahito Yamamoto, Toshikazu Shiba, Azuma Ohuchi |
| 2001 | Boundary Components of Thickened Graphs. | Natasa Jonoska, Masahico Saito |
| 2001 | Coding Properties of DNA Languages. | Salah Hussini, Lila Kari, Stavros Konstantinidis |
| 2001 | DNA-based Parallel Computation of Simple Arithmetic. | Hubert Hug, Rainer Schuler |
| 2001 | An Object Oriented Simulation of Real Occurring Molecular Biological Processes for DNA Computing and Its Experimental Verification. | Thomas Hinze, Uwe Hatnik, Monika Sturm |
| 2001 | Aqueous Solutions of Algorithmic Problems: Emphasizing Knights on a 3 x 3. | Tom Head, Xia Chen, Matthew J. Nichols, Masayuki Yamamura, Susannah Gal |
| 2001 | Biomolecular Computation in Virtual Test Tubes. | Max H. Garzon, Chris Oehmen |
| 2001 | DNASequencesGenerator: A Program for the Construction of DNA Sequences. | Udo Feldkamp, Sam Saghafi, Wolfgang Banzhaf, Hilmar Rauhe |
| 2001 | Patterns of Micronuclear Genes in ciliates. | Andrzej Ehrenfeucht, Tero Harju, Ion Petre, Grzegorz Rozenberg |
| 2001 | A Note on Graph Splicing Languages. | N. Gnanamalar David, K. G. Subramanian, D. Gnanaraj Thomas |
| 2001 | Towards an Electronic Implementation of Membrane Computing: A Formal Description of Non-deterministic Evolution in Transition P Systems. | Angel V. Baranda, Fernando Arroyo, Juan Castellanos, Rafael Gonzalo |
| 2001 | Peptide Computing - Universality and Complexity. | M. Sakthi Balan, Kamala Krithivasan, Y. Sivasubramanyam |