DNA Computing and Molecular Programming

DNA

CORE rank

CORE rank (raw)

Fields of research

Applied Computing

Papers indexed

468

2000–2025

Best Applied Computing conferences

Papers per year

200039 peak2025

Most published authors

DNA papers

468 records sourced from DBLP. Search titles, filter by year, sort by recency.

Year	Title	Authors
2018	A Reaction Network Scheme Which Implements the EM Algorithm.	Muppirala Viswa Virinchi, Abhishek Behera, Manoj Gopalkrishnan
2018	: Molecular Programming Language.	Marko Vasic, David Soloveichik, Sarfraz Khurshid
2018	A Content-Addressable DNA Database with Learned Sequence Encodings.	Kendall Stewart, Yuan-Jyue Chen, David Ward, Xiaomeng Liu, Georg Seelig, Karin Strauss, Luis Ceze
2018	Temporal DNA Barcodes: A Time-Based Approach for Single-Molecule Imaging.	Shalin Shah, John H. Reif
2018	Hierarchical Growth Is Necessary and (Sometimes) Sufficient to Self-assemble Discrete Self-similar Fractals.	Jacob Hendricks, Joseph Opseth, Matthew J. Patitz, Scott M. Summers
2018	Transcript Design Problem of Oritatami Systems.	Yo-Sub Han, Hwee Kim, Shinnosuke Seki
2018	Construction of Geometric Structure by Oritatami System.	Yo-Sub Han, Hwee Kim
2018	Forming Tile Shapes with Simple Robots.	Robert Gmyr, Kristian Hinnenthal, Irina Kostitsyna, Fabian Kuhn, Dorian Rudolph, Christian Scheideler, Thim Strothmann
2018	Optimizing Tile Set Size While Preserving Proofreading with a DNA Self-assembly Compiler.	Constantine G. Evans, Erik Winfree
2018	Self-assembly of 3-D Structures Using 2-D Folding Tiles.	Jrme Durand-Lose, Jacob Hendricks, Matthew J. Patitz, Ian Perkins, Michael Sharp
2018	Know When to Fold 'Em: Self-assembly of Shapes by Folding in Oritatami.	Erik D. Demaine, Jacob Hendricks, Meagan Olsen, Matthew J. Patitz, Trent A. Rogers, Nicolas Schabanel, Shinnosuke Seki, Hadley Thomas
2018	Freezing Simulates Non-freezing Tile Automata.	Cameron T. Chalk, Austin Luchsinger, Eric Martinez, Robert Schweller, Andrew Winslow, Tim Wylie
2017	Inferring Parameters for an Elementary Step Model of DNA Structure Kinetics with Locally Context-Dependent Arrhenius Rates.	Sedigheh Zolaktaf, Frits Dannenberg, Xander Rudelis, Anne Condon, Joseph M. Schaeffer, Mark Schmidt, Chris Thachuk, Erik Winfree
2017	The Design Space of Strand Displacement Cascades with Toehold-Size Clamps.	Boya Wang, Chris Thachuk, Andrew D. Ellington, David Soloveichik
2017	A Stochastic Molecular Scheme for an Artificial Cell to Infer Its Environment from Partial Observations.	Muppirala Viswa Virinchi, Abhishek Behera, Manoj Gopalkrishnan
2017	Complexities for High-Temperature Two-Handed Tile Self-assembly.	Robert Schweller, Andrew Winslow, Tim Wylie
2017	Chemical Boltzmann Machines.	William Poole, Andrs Ortiz-Muoz, Abhishek Behera, Nick S. Jones, Thomas E. Ouldridge, Erik Winfree, Manoj Gopalkrishnan
2017	Unknotted Strand Routings of Triangulated Meshes.	Abdulmelik Mohammed, Mustafa Hajij
2017	Automated, Constraint-Based Analysis of Tethered DNA Nanostructures.	Matthew R. Lakin, Andrew Phillips
2017	DNA-Templated Synthesis Optimization.	Bjarke N. Hansen, Kim S. Larsen, Daniel Merkle, Alexei Mihalchuk
2017	Ruleset Optimization on Isomorphic Oritatami Systems.	Yo-Sub Han, Hwee Kim
2017	Thermodynamic Binding Networks.	David Doty, Trent A. Rogers, David Soloveichik, Chris Thachuk, Damien Woods
2017	Simplifying Analyses of Chemical Reaction Networks for Approximate Majority.	Anne Condon, Monir Hajiaghayi, David G. Kirkpatrick, Jn Manuch
2017	A Minimal Requirement for Self-assembly of Lines in Polylogarithmic Time.	Yen-Ru Chin, Jui-Ting Tsai, Ho-Lin Chen
2017	A DNA Neural Network Constructed from Molecular Variable Gain Amplifiers.	Sherry Xi Chen, Georg Seelig

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