| 1994 | Prototyping a Genetics Deductive Database . | Catherine Hearne, Zhan Cui, Simon Parsons, Saki Hajnal |
| 1994 | A Flexible Approach to Genome Map Assembly. | Eric Harley, Anthony J. Bonner |
| 1994 | The Prediction of the Degree of Exposure to Solvent of Amino Acid Residues Via Genetic Programming. | Simon Handley |
| 1994 | Creating a Knowledge Base of Biological Research Papers. | Carole D. Hafner, Kenneth Baclawski, Robert P. Futrelle, Natalya Fridman Noy, Shobana Sampath |
| 1994 | RNA Modeling Using Gibbs Sampling and Stochastic Context Free Grammars. | Leslie Grate, Mark Herbster, Richard Hughey, David Haussler, I. Saira Mian, Harry Noller |
| 1994 | Assigning Function to CDS Through Qualified Query Answering: Beyond Alignment and Motifs. | Terry Gaasterland, Natalia Maltsev, Jorge Lobo, Guo-Hua Chen |
| 1994 | Stochastic Motif Extraction Using Hidden Markov Model. | Yukiko Fujiwara, Minoru Asogawa, Akihiko Konagaya |
| 1994 | A Restriction Mapping Engine Using Constraint Logic Programming. | Trevor I. Dix, Chut N. Yee |
| 1994 | Using Interval Logic for Order Assembly. | Zhan Cui |
| 1994 | Knowledge Discovery of Multilevel Protein Motifs. | Darrell Conklin, Suzanne Fortier, Janice I. Glasgow |
| 1994 | VQLM: A Visual Query Language for Macromolecular Structural Databases. | Dawn M. Cohen, Kumar Vadaparty, Bill Dickinson, Hemanth Salem |
| 1994 | Genetic Map Construction with Constraints. | Dominic A. Clark, Christopher J. Rawlings, Sylvie Doursenot |
| 1994 | Design and Application of a C++ Macromolecular Class Library. | Weider Chang, Ilya N. Shindyalov, Calton Pu, Philip E. Bourne |
| 1994 | Integration of Competing Ancillary Assertions in Genome Assembly. | Christian Burks, Rebecca J. Parsons, Michael L. Engle |
| 1994 | A Generalized Profile Syntax for Biomolecular Sequence Motifs and its Function in Automatic Sequence Interpretation. | Philipp Bucher, Amos Bairoch |
| 1994 | Protein Design by Optimization of a Sequence-Structure Quality Function. | Steven E. Brenner, Alan Berry |
| 1994 | An Intelligent System for Comparing Protein Structures. | Ethan Benatan |
| 1994 | Fitting a Mixture Model By Expectation Maximization To Discover Motifs In Biopolymer. | Timothy L. Bailey, Charles Elkan |
| 1994 | Constraint Satisfaction Techniques for Modeling Large Complexes: Application to the Central Domain of 16S Ribosomal RNA. | Russ B. Altman, Bryn Weiser, Harry F. Noller |
| 1994 | Finding an Average Core Structure: Application to the Globins. | Russ B. Altman, Mark Gerstein |
| 1994 | The Repeat Pattern Toolkit (RPT): Analyzing the Structure and Evolution of the C. elegans Genome. | Pankaj Agarwal, David J. States |
| 1993 | A Constraint Reasoning System for Automating Sequence-Specific Resonance Assignments from Multidimensional Protein NMR Spectra. | Diane E. Zimmerman, Casimir A. Kulikowski, Gaetano T. Montelione |
| 1993 | Automatic Derivation of Substructures Yields Novel Structural Building Blocks in Globular Proteins. | Xiru Zhang, Jacquelyn S. Fetrow, William A. Rennie, David L. Waltz, George Berg |
| 1993 | Neural Networks for Molecular Sequence Classification. | Cathy H. Wu, Michael W. Berry, Yuk-Shing Fung, Jerry McLarty |
| 1993 | Transmembrane Segment Prediction from Protein Sequence Data. | Sholom M. Weiss, Dawn M. Cohen, Nitin Indurkhya |