| 2010 | Compressing Genomic Sequence Fragments Using SlimGene. | Christos Kozanitis, Christopher T. Saunders, Semyon Kruglyak, Vineet Bafna, George Varghese |
| 2010 | The Poisson Margin Test for Normalisation Free Significance Analysis of NGS Data. | Adam Kowalczyk, Justin Bedo, Thomas C. Conway, Bryan Beresford-Smith |
| 2010 | The Problem of Chromosome Reincorporation in DCJ Sorting and Halving. | Jakub Kovc, Marlia D. V. Braga, Jens Stoye |
| 2010 | Incremental Signaling Pathway Modeling by Data Integration. | Geoffrey Koh, David Hsu, P. S. Thiagarajan |
| 2010 | Simultaneous Identification of Causal Genes and Dys-Regulated Pathways in Complex Diseases. | Yoo-Ah Kim, Stefan Wuchty, Teresa M. Przytycka |
| 2010 | Extracting Between-Pathway Models from E-MAP Interactions Using Expected Graph Compression. | David R. Kelley, Carl Kingsford |
| 2010 | naiveBayesCall: An Efficient Model-Based Base-Calling Algorithm for High-Throughput Sequencing. | Wei-Chun Kao, Yun S. Song |
| 2010 | Scaffold Filling under the Breakpoint Distance. | Haitao Jiang, Chunfang Zheng, David Sankoff, Binhai Zhu |
| 2010 | The Zero Exemplar Distance Problem. | Minghui Jiang |
| 2010 | Gapped Spectral Dictionaries and Their Applications for Database Searches of Tandem Mass Spectra. | Kyowon Jeong, Sangtae Kim, Nuno Bandeira, Pavel A. Pevzner |
| 2010 | Towards Automated Structure-Based NMR Resonance Assignment. | Richard Jang, Xin Gao, Ming Li |
| 2010 | Efficient Computation of Approximate Gene Clusters Based on Reference Occurrences. | Katharina Jahn |
| 2010 | A New Algorithm for Improving the Resolution of Cryo-EM Density Maps. | Michael Hirsch, Bernhard Schlkopf, Michael Habeck |
| 2010 | Discovering Transcriptional Modules by Combined Analysis of Expression Profiles and Regulatory Sequences. | Yonit Halperin, Chaim Linhart, Igor Ulitsky, Ron Shamir |
| 2010 | The Clark Phase-able Sample Size Problem: Long-Range Phasing and Loss of Heterozygosity in GWAS. | Bjarni V. Halldrsson, Derek Aguiar, Ryan Tarpine, Sorin Istrail |
| 2010 | Distinguishing Direct versus Indirect Transcription Factor-DNA Interactions. | Raluca Gordn, Alexander J. Hartemink, Martha L. Bulyk |
| 2010 | Deciphering the Swine-Flu Pandemics of 1918 and 2009. | Richard A. Goldstein, Mario dos Reis, Asif U. Tamuri, Alan J. Hay |
| 2010 | Advances on Genome Duplication Distances. | Yves Gagnon, Olivier Tremblay-Savard, Denis Bertrand, Nadia El-Mabrouk |
| 2010 | Inference of Isoforms from Short Sequence Reads. | Jianxing Feng, Wei Li, Tao Jiang |
| 2010 | An Efficient Algorithm for Gene/Species Trees Parsimonious Reconciliation with Losses, Duplications and Transfers. | Jean-Philippe Doyon, Cline Scornavacca, Konstantin Yu. Gorbunov, Gergely J. Szllosi, Vincent Ranwez, Vincent Berry |
| 2010 | A Simulation Tool for the Study of Symmetric Inversions in Bacterial Genomes. | Ulisses Dias, Zanoni Dias, Joo C. Setubal |
| 2010 | Assessing the Robustness of Complete Bacterial Genome Segmentations. | Hugo Devillers, Hlne Chiapello, Sophie Schbath, Meriem El Karoui |
| 2010 | Alignment-Free Phylogenetic Reconstruction. | Constantinos Daskalakis, Sbastien Roch |
| 2010 | Discovering Regulatory Overlapping RNA Transcripts. | Timothy Danford, Robin D. Dowell, Sudeep Agarwala, Paula Grisafi, Gerald Fink, David K. Gifford |
| 2010 | Proteome Coverage Prediction for Integrated Proteomics Datasets. | Manfred Claassen, Ruedi Aebersold, Joachim M. Buhmann |