| 1997 | Assessing inhomogeneities in bacterial long genomic sequences. | Samuel Karlin |
| 1997 | Faster and simpler algorithm for sorting signed permutations by reversals. | Haim Kaplan, Ron Shamir, Robert Endre Tarjan |
| 1997 | Mapping clones with a given ordering or interleaving (abstract). | Tao Jiang, Richard M. Karp |
| 1997 | Algorithms for computing and integrating physical maps using unique probes. | Mudita Jain, Eugene W. Myers |
| 1997 | The application of Markov chain Monte Carlo methods to radiation hybrid mapping. | S. C. Heath |
| 1997 | Lattice and off-lattice side chain models of protein folding (extended abstract): linear time structure prediction better than 86% of optimal. | William E. Hart, Sorin Istrail |
| 1997 | On the computational complexity of sequence design problems. | William E. Hart |
| 1997 | An algorithmic approach to multiple complete digest mapping. | Daniel P. Fasulo, Tao Jiang, Richard M. Karp, Reuben J. Settergren, Edward C. Thayer |
| 1997 | Protein structure prediction and potential energy landscape analysis using continuous global minimization. | Ken A. Dill, Andrew T. Phillips, J. Ben Rosen |
| 1997 | On the complexity and approximation of syntenic distance. | Bhaskar DasGupta, Tao Jiang, Sampath Kannan, Ming Li, Z. Sweedyk |
| 1997 | Numerical taxonomy on data (abstract): experimental results. | Jaime Cohen, Martin Farach |
| 1997 | Monte Carlo sequence alignment. | Gary A. Churchill |
| 1997 | A branch-and-cut approach to physical mapping with end-probes. | Thomas Christof, Michael Jnger, John D. Kececioglu, Petra Mutzel, Gerhard Reinelt |
| 1997 | Sorting by reversals is difficult. | Alberto Caprara |
| 1997 | The power of surface-based DNA computation (extended abstract). | Weiping Cai, Anne Condon, Robert M. Corn, Elton Glaser, Zhengdong Fei, Tony Frutos, Zhen Guo, Max G. Lagally, Qinghua Liu, Lloyd M. Smith, Andrew Thiel |
| 1997 | Fabricating arrays of strings. | J. Richard Bradley, Steven Skiena |
| 1997 | Chain growth algorithms for HP-type lattice proteins. | Erich Bornberg-Bauer |
| 1997 | An iterative method for improved protein structural motif recognition. | Bonnie Berger, Mona Singh |
| 1997 | Sequence alignment with tandem duplication. | Gary Benson |
| 1997 | On constructing radiation hybrid maps (extended abstract). | Amir Ben-Dor, Benny Chor |
| 1997 | ReAligner: a program for refining DNA sequence multi-alignments. | Eric L. Anson, Eugene W. Myers |
| 1997 | On the approximation of protein threading. | Tatsuya Akutsu, Satoru Miyano |
| 1997 | Local rules for protein folding on a triangular lattice and generalized hydrophobicity in the HP model. | Richa Agarwala, Serafim Batzoglou, Vlado Danck, Scott E. Decatur, Martin Farach, Sridhar Hannenhalli, S. Muthukrishnan, Steven Skiena |