| 2017 | COMPSAC | Making DNS Servers Resistant to Cyber Attacks: An Empirical Study on Formal Methods and Performance. | Barry S. Fagin, Bradley Klanderman, Martin C. Carlisle |
| 2012 | GLOBECOM | IRONSIDES: DNS with no single-packet denial of service or remote code execution vulnerabilities. | Martin C. Carlisle, Barry S. Fagin |
| 2006 | SIGCSE | Do Lego Mindstorms Robots have a future in CS education? | Myles F. McNally, Michael Goldweber, Barry S. Fagin, Frank Klassner |
| 2003 | SIGCSE | Measuring the effectiveness of robots in teaching computer science. | Barry S. Fagin, Laurence D. Merkle |
| 2003 | SIGCSE | The fulbright program: international teaching and curriculum development experiences. | Sue Fitzgerald, G. Michael Schneider, Robert M. Aiken, Barry S. Fagin |
| 2001 | SIGCSE | The use of robots in the undergraduate curriculum: experience reports. | Michael Goldweber, Clare Bates Congdon, Barry S. Fagin, Deborah J. Hwang, Frank Klassner |
| 2000 | ITiCSE | Using Ada-based robotics to teach computer science. | Barry S. Fagin |
| 1995 | MICRO | Partial resolution in branch target buffers. | Barry S. Fagin, Kathryn Russell |
| 1994 | FPL | A Reprogrammable Processor for Fractal Image Compression. | Barry S. Fagin, Pichet Chintrakulchai |
| 1994 | SIGCSE | Two years of "The Digital World": portable courseware for technological literacy. | Barry S. Fagin |
| 1992 | ICCD | FPGA and Rapid Prototyping Technology Use in a Special Purpose Computer for Molecular Genetics. | Barry S. Fagin, J. Gill Watt |
| 1992 | RSP | Prototyping the DLX microprocessor. | Barry S. Fagin, Pichet Chintrakulchai |
| 1987 | ISCA | Performance Studies of a Parallel Prolog Architecture. | Barry S. Fagin, Alvin M. Despain |
| 1985 | MICRO | Compiling Prolog into microcode: a case study using the NCR/32-000. | Barry S. Fagin, Yale N. Patt, Vason P. Srini, Alvin M. Despain |