| 2017 | ICCS | Performance and Scalability Study of FMM Kernels on Novel Multi- and Many-core Architectures. | Antn Rey, Francisco D. Igual, Manuel Prieto-Matas, Jan F. Prins |
| 2017 | ISRR | The Economic Case for Cloud-Based Computation for Robot Motion Planning. | Jeffrey Ichnowski, Jan F. Prins, Ron Alterovitz |
| 2017 | RECOMB | E Pluribus Unum: United States of Single Cells. | Joshua D. Welch, Alexander J. Hartemink, Jan F. Prins |
| 2017 | SC | Improving Energy Efficiency in Memory-constrained Applications Using Core-specific Power Control. | Sridutt Bhalachandra, Allan Porterfield, Stephen L. Olivier, Jan F. Prins, Robert J. Fowler |
| 2016 | RECOMB | SLICER: Inferring Branched, Nonlinear Cellular Trajectories from Single Cell RNA-seq Data. | Joshua D. Welch, Ziqing Liu, Li Wang, Junjie Lu, Paul Lerou, Jeremy E. Purvis, Li Qian, Alexander J. Hartemink, Jan F. Prins |
| 2016 | SC | Asynchronous In Situ Connected-Components Analysis for Complex Fluid flows. | James E. McClure, Mark A. Berrill, Jan F. Prins, Cass T. Miller |
| 2016 | WAFR | Cloud-based Motion Plan Computation for Power-Constrained Robots. | Jeffrey Ichnowski, Jan F. Prins, Ron Alterovitz |
| 2014 | ICRA | Cache-aware asymptotically-optimal sampling-based motion planning. | Jeffrey Ichnowski, Jan F. Prins, Ron Alterovitz |
| 2012 | RECOMB | A Robust Method for Transcript Quantification with RNA-seq Data. | Yan Huang, Yin Hu, Corbin D. Jones, James N. MacLeod, Derek Y. Chiang, Yufeng Liu, Jan F. Prins, Jinze Liu |
| 2012 | SC | Characterizing and mitigating work time inflation in task parallel programs. | Stephen Olivier, Bronis R. de Supinski, Martin Schulz, Jan F. Prins |
| 2008 | ICPP | Scalable Dynamic Load Balancing Using UPC. | Stephen Olivier, Jan F. Prins |
| 2008 | WABI | Genotype Sequence Segmentation: Handling Constraints and Noise. | Qi Zhang, Wei Wang, Leonard McMillan, Jan F. Prins, Fernando Pardo-Manuel de Villena, David Threadgill |
| 2007 | SDM | PoClustering: Lossless Clustering of Dissimilarity Data. | Jinze Liu, Qi Zhang, Wei Wang, Leonard McMillan, Jan F. Prins |
| 2006 | KDD | Clustering pair-wise dissimilarity data into partially ordered sets. | Jinze Liu, Qi Zhang, Wei Wang, Leonard McMillan, Jan F. Prins |
| 2006 | SDM | Mining Approximate Frequent Itemsets In the Presence of Noise: Algorithm and Analysis. | Jinze Liu, Susan Paulsen, Xing Sun, Wei Wang, Andrew B. Nobel, Jan F. Prins |
| 2005 | ICDM | Mining Approximate Frequent Itemsets from Noisy Data. | Jinze Liu, Susan Paulsen, Wei Wang, Andrew B. Nobel, Jan F. Prins |
| 2004 | KDD | SPIN: mining maximal frequent subgraphs from graph databases. | Jun Huan, Wei Wang, Jan F. Prins, Jiong Yang |
| 2004 | PSB | Accurate Classification of Protein Structural Families Using Coherent Subgraph Analysis. | Jun Huan, Wei Wang, Anglina Washington, Jan F. Prins, Ruchir Shah, Alexander Tropsha |
| 2004 | RECOMB | Mining protein family specific residue packing patterns from protein structure graphs. | Jun Huan, Wei Wang, Deepak Bandyopadhyay, Jack Snoeyink, Jan F. Prins, Alexander Tropsha |
| 2003 | ICDM | Efficient Mining of Frequent Subgraphs in the Presence of Isomorphism. | Jun Huan, Wei Wang, Jan F. Prins |
| 2000 | SAS | Flattening Is an Improvement. | James Riely, Jan F. Prins |
| 1996 | EuroPar | A Refinement Methodology for Developing Data-Parallel Applications. | Lars S. Nyland, Jan F. Prins, Allen Goldberg, Peter Mills, John H. Reif, Robert A. Wagner |
| 1993 | PPoPP | Transforming High-Level Data-Parallel Programs into Vector Operations. | Jan F. Prins, Daniel W. Palmer |
| 1992 | SPAA | Implementations of Randomized Sorting on Large Parallel Machines. | William L. Hightower, Jan F. Prins, John H. Reif |
| 1988 | POPL | Integrating Non-Interfering Versions of Programs. | Susan Horwitz, Jan F. Prins, Thomas W. Reps |
| 1988 | POPL | On the Adequacy of Program Dependence Graphs for Representing Programs. | Susan Horwitz, Jan F. Prins, Thomas W. Reps |
| 1982 | MICRO | Monte Carlo techniques in code optimization. | Dean Jacobs, Jan F. Prins, Peter Siegel, Kenneth Wilson |