| 2026 | ASPDAC | Accessible Ratio-Specific Mixing: Single-Pressure-Driven Multi-Reagent Mixer Design and Synthesis for 3D-Printed Microfluidics. | Yushen Zhang, Debraj Kundu, Tsun-Ming Tseng, Sudip Roy, Shigeru Yamashita, Ulf Schlichtmann |
| 2026 | VLSID | A Polynomial Time Routing Algorithm for Meda Biochips Based on Dijkstra's Algorithm. | Issei Nakamura, Shigeru Yamashita, Hiroyuki Tomiyama, Ankur Guputa |
| 2025 | DATE | Loading-Aware Mixing-Efficient Sample Preparation on Programmable Microfluidic Device. | Debraj Kundu, Tsun-Ming Tseng, Shigeru Yamashita, Ulf Schlichtmann |
| 2025 | RTCSA | Poster: A Comparative Analysis of Machine Learning Models for SAT Runtime Prediction. | Tomohisa Kawakami, Tomoyasu Shimada, Xiangbo Kong, Hiroyuki Tomiyama, Shigeru Yamashita |
| 2024 | ASPDAC | Optimizing Decision Diagrams for Measurements of Quantum Circuits. | Ryosuke Matsuo, Rudy Raymond, Shigeru Yamashita, Shin-ichi Minato |
| 2024 | DAC | Multi-Resonance Mesh-Based Wavelength-Routed Optical Networks-on-Chip. | Zhidan Zheng, Liaoyuan Cheng, Kanta Arisawa, Qingyu Li, Alexandre Truppel, Shigeru Yamashita, Tsun-Ming Tseng, Ulf Schlichtmann |
| 2024 | QCE | Utilizing Don't-Cares to Minimize CNOTs in Synthesizing NNA Compliant Quantum Circuits. | David Clarino, Kyouhei Seino, Atsushi Matsuo, Shigeru Yamashita |
| 2024 | QCE | Optimization for Gaussian Elimination-Based NNA-Compliant Circuit Synthesis Method by Inserting CN OT Gates. | Zanhe Qi, Atsushi Matsuo, Shigeru Yamashita |
| 2023 | ASPDAC | An SMT-Solver-Based Synthesis of NNA-Compliant Quantum Circuits Consisting of CNOT, H and T Gates. | Kyohei Seino, Shigeru Yamashita |
| 2023 | DSD | Minimizing the Impact of Unbalanced Splitting Errors on DMFBs Without Any Overhead. | Yuji Wada, Shigeru Yamashita |
| 2023 | ICCAD | Optimizing LUT-Based Quantum Circuit Synthesis Using Relative Phase Boolean Operations. | David Clarino, Naoya Asada, Shigeru Yamashita |
| 2023 | VLSID | Transport-Free Placement of Mixers for Realizing Bioprotocol on Programmable Microfluidic Devices. | Masataka Hirai, Debraj Kundu, Shigeru Yamashita, Sudip Roy, Hiroyuki Tomiyama |
| 2022 | RC | Optimization of Quantum Boolean Circuits by Relative-Phase Toffoli Gates. | Shohei Kuroda, Shigeru Yamashita |
| 2021 | ASPDAC | Dynamical Decomposition and Mapping of MPMCT Gates to Nearest Neighbor Architectures. | Atsushi Matsuo, Wakaki Hattori, Shigeru Yamashita |
| 2021 | DSD | Design for Restricted-Area and Fast Dilution using Programmable Microfluidic Device based Lab-on-a-Chip. | Shuaijie Ying, Sudip Roy, Juinn-Dar Huang, Shigeru Yamashita |
| 2021 | VLSID | A Multiply Accumulator for Stochastic Numbers Without Scaling Errors. | Katsuhiro Ichikawa, Shigeru Yamashita |
| 2020 | ASPDAC | Optimization of Fluid Loading on Programmable Microfluidic Devices for Bio-protocol Execution. | Satoru Maruyama, Debraj Kundu, Shigeru Yamashita, Sudip Roy |
| 2020 | DATE | Transport-Free Module Binding for Sample Preparation using Microfluidic Fully Programmable Valve Arrays. | Gautam Choudhary, Sandeep Pal, Debraj Kundu, Sukanta Bhattacharjee, Shigeru Yamashita, Bing Li, Ulf Schlichtmann, Sudip Roy |
| 2019 | ISCAS | Reducing the Overhead of Mapping Quantum Circuits to IBM Q System. | Atsushi Matsuo, Wakaki Hattori, Shigeru Yamashita |
| 2019 | RC | An Efficient Method for Quantum Circuit Placement Problem on a 2-D Grid. | Atsushi Matsuo, Shigeru Yamashita |
| 2019 | VLSID | Reducing the Overhead of Stochastic Number Generators Without Increasing Error. | Yudai Sakamoto, Shigeru Yamashita |
| 2018 | RC | Quantum Circuit Optimization by Changing the Gate Order for 2D Nearest Neighbor Architectures. | Wakaki Hattori, Shigeru Yamashita |
| 2016 | DATE | Effect of LFSR seeding, scrambling and feedback polynomial on stochastic computing accuracy. | Jason Helge Anderson, Yuko Hara-Azumi, Shigeru Yamashita |
| 2016 | ISCAS | A pre-optimization technique to generate initial reversible circuits with low quantum cost. | Nurul Ain Binti Adnan, Kouhei Kushida, Shigeru Yamashita |
| 2016 | VLSID | Design of Microfluidic Biochips: Connecting Algorithms and Foundations of Chip Design to Biochemistry and the Life Sciences. | Tsung-Yi Ho, Shigeru Yamashita, Ansuman Banerjee, Sudip Roy |
| 2016 | VLSID | Stochastic Number Generation with Few Inputs. | Ritsuko Muguruma, Shigeru Yamashita |
| 2016 | VLSID | ILP-based Synthesis for Sample Preparation Applications on Digital Microfluidic Biochips. | Abhimanyu Yadav, Trung Anh Dinh, Daiki Kitagawa, Shigeru Yamashita |
| 2015 | ETS | Testing of digital microfluidic biochips with arbitrary layouts. | Trung Anh Dinh, Shigeru Yamashita, Tsung-Yi Ho, Krishnendu Chakrabarty |
| 2015 | ITC | A general testing method for digital microfluidic biochips under physical constraints. | Trung Anh Dinh, Shigeru Yamashita, Tsung-Yi Ho, Krishnendu Chakrabarty |
| 2014 | ASPDAC | A network-flow-based optimal sample preparation algorithm for digital microfluidic biochips. | Trung Anh Dinh, Shigeru Yamashita, Tsung-Yi Ho |
| 2014 | DATE | A logic integrated optimal pin-count design for digital microfluidic biochips. | Trung Anh Dinh, Shigeru Yamashita, Tsung-Yi Ho |
| 2014 | FCCM | Better-Than-DMR Techniques for Yield Improvement. | Shunichi Sanae, Yuko Hara-Azumi, Shigeru Yamashita, Yasuhiko Nakashima |
| 2014 | RC | 2D Qubit Layout Optimization for Topological Quantum Computation. | Nurul Ain Binti Adnan, Shigeru Yamashita, Simon J. Devitt, Kae Nemoto |
| 2013 | ASPDAC | A clique-based approach to find binding and scheduling result in flow-based microfluidic biochips. | Trung Anh Dinh, Shigeru Yamashita, Tsung-Yi Ho, Yuko Hara-Azumi |
| 2013 | PRDC | On the Error Resiliency of Combinational Logic Cells - Implications for Nano-based Digital Design. | P. Balasubramanian, Shigeru Yamashita |
| 2012 | ASPDAC | On error tolerance and Engineering Change with Partially Programmable Circuits. | Hratch Mangassarian, Hiroaki Yoshida, Andreas G. Veneris, Shigeru Yamashita, Masahiro Fujita |
| 2012 | TAMC | Tensor Rank and Strong Quantum Nondeterminism in Multiparty Communication. | Marcos Villagra, Masaki Nakanishi, Shigeru Yamashita, Yasuhiko Nakashima |
| 2011 | GRC | An efficient algorithm for constructing a Sequence Binary Decision Diagram representing a set of reversed sequences. | Hiroshi Aoki, Shigeru Yamashita, Shin-ichi Minato |
| 2011 | RC | Changing the Gate Order for Optimal LNN Conversion. | Atsushi Matsuo, Shigeru Yamashita |
| 2010 | ICCE | An Evaluation of "Face-to-Face" Group Activity on Blended-Learning in University Cooperation. | Yuki Mori, Shohei Shimada, Tetsuo Suemoto, Shigeru Yamashita, Shigeto Ozawa |
| 2008 | COCOON | Multi-party Quantum Communication Complexity with Routed Messages. | Seiichiro Tani, Masaki Nakanishi, Shigeru Yamashita |
| 2008 | ICALP | Polynomial-Time Construction of Linear Network Coding. | Kazuo Iwama, Harumichi Nishimura, Mike Paterson, Rudy Raymond, Shigeru Yamashita |
| 2008 | ISAAC | Quantum Query Complexity of Boolean Functions with Small On-Sets. | Andris Ambainis, Kazuo Iwama, Masaki Nakanishi, Harumichi Nishimura, Rudy Raymond, Seiichiro Tani, Shigeru Yamashita |
| 2008 | PRDC | A Functional Unit with Small Variety of Highly Reliable Cells. | Kouki Suzuki, Takashi Nakada, Masaki Nakanishi, Shigeru Yamashita, Yasuhiko Nakashima |
| 2007 | CEC | A practical framework to utilize quantum search. | Shigeru Yamashita, Masaki Nakanishi |
| 2007 | ICALP | Unbounded-Error One-Way Classical and Quantum Communication Complexity. | Kazuo Iwama, Harumichi Nishimura, Rudy Raymond, Shigeru Yamashita |
| 2007 | ISAAC | Unbounded-Error Classical and Quantum Communication Complexity. | Kazuo Iwama, Harumichi Nishimura, Rudy Raymond, Shigeru Yamashita |
| 2007 | STACS | Quantum Network Coding. | Masahito Hayashi, Kazuo Iwama, Harumichi Nishimura, Rudy Raymond Harry Putra, Shigeru Yamashita |
| 2006 | ASPDAC | A transduction-based framework to synthesize RSFQ circuits. | Shigeru Yamashita, Katsunori Tanaka, Hideyuki Takada, Koji Obata, Kazuyoshi Takagi |
| 2006 | CISS | A New Approach to Online FPGA Placement. | Mitsuru Tomono, Masaki Nakanishi, Shigeru Yamashita, Kazuo Nakajima, Katsumasa Watanabe |
| 2006 | COCOON | Robust Quantum Algorithms with | Tomoya Suzuki, Shigeru Yamashita, Masaki Nakanishi, Katsumasa Watanabe |
| 2006 | ISIT | (4, 1)-Quantum Random Access Coding Does Not Exist. | Masahito Hayashi, Kazuo Iwama, Harumichi Nishimura, Rudy Raymond, Shigeru Yamashita |
| 2005 | ASPDAC | Event-oriented computing with reconfigurable platform. | Mitsuru Tomono, Masaki Nakanishi, Katsumasa Watanabe, Shigeru Yamashita |
| 2004 | FPGA | SPFD-based one-to-many rewiring. | Katsunori Tanaka, Shigeru Yamashita, Yahiko Kambayashi |
| 2004 | STACS | Quantum Identification of Boolean Oracles. | Andris Ambainis, Kazuo Iwama, Akinori Kawachi, Hiroyuki Masuda, Raymond H. Putra, Shigeru Yamashita |
| 2003 | COCOON | Quantum Sampling for Balanced Allocations. | Kazuo Iwama, Akinori Kawachi, Shigeru Yamashita |
| 2002 | DAC | Transformation rules for designing CNOT-based quantum circuits. | Kazuo Iwama, Yahiko Kambayashi, Shigeru Yamashita |
| 2000 | ASPDAC | An efficient framework of using various decomposition methods to synthesize LUT networks and its evaluation. | Shigeru Yamashita, Hiroshi Sawada, Akira Nagoya |
| 1998 | ASPDAC | New Methods to Find Optimal Non-Disjoint Bi-Decompositions. | Shigeru Yamashita, Hiroshi Sawada, Akira Nagoya |
| 1998 | DATE | Restructuring Logic Representations with Easily Detectable Simple Disjunctive Decompositions. | Hiroshi Sawada, Shigeru Yamashita, Akira Nagoya |
| 1996 | ICCAD | A new method to express functional permissibilities for LUT based FPGAs and its applications. | Shigeru Yamashita, Hiroshi Sawada, Akira Nagoya |
| 1995 | ASPDAC | Optimization methods for lookup-table-based FPGAs using transduction method. | Shigeru Yamashita, Yahiko Kambayashi, Saburo Muroga |