| 2009 | Performance prediction for RNA design using parametric and non-parametric regression models. | Denny C. Dai, Kay C. Wiese |
| 2009 | rnaDesign: Local search for RNA secondary structure design. | Denny C. Dai, Herbert H. Tsang, Kay C. Wiese |
| 2009 | Comparison of feature selection techniques for viral DNA replication origin prediction. | Raul Cruz-Cano, Ming-Ying Leung |
| 2009 | Nerve graft selection for peripheral nerve regeneration using neural networks trained by a hybrid ACO/PSO method. | Matthew Conforth, Yan Meng, Chandra Valmikinathan, Xiaojun Yu |
| 2009 | Haplotype inference using a genetic algorithm. | Dongsheng Che, Haibao Tang, Yinglei Song |
| 2009 | Emotion recognition with consideration of facial expression and physiological signals. | Chuan-Yu Chang, Jeng-Shiun Tsai, Chi-Jane Wang, Pau-Choo Chung |
| 2009 | A system for recognition of biological patterns in toxins using computational intelligence. | Bernardo Penna Resende de Carvalho, Thais Melo Mendes, Ricardo de Souza Ribeiro, Ricardo Fortuna, Jos Marcos Veneroso, Maurcio de Alvarenga Mudado |
| 2009 | Application of machine learning approaches on quantitative structure activity relationships. | Mariusz Butkiewicz, Ralf Mueller, Danilo Selic, Eric Dawson, Jens Meiler |
| 2009 | Assessing the impact of network depth on the analysis of PPI networks: A case study. | Jaine K. Blayney, Haiying Wang, Huiru Zheng, Francisco Azuaje |
| 2009 | Modeling oncology gene pathways network with multiple genotypes and phenotypes via a copula method. | Le Bao, Zhou Zhu, Jingjing Ye |
| 2009 | Fuzzy rule base classifier fusion for protein mass spectra based ovarian cancer diagnosis. | Amin Assareh, L. Gwenn Volkert |
| 2009 | Using diffusion characters for the taxonomy of self-organizing social networks. | Daniel A. Ashlock, Colin Lee |
| 2009 | Diagnostic character location within the cryptic skipper butterfly species complex with an evolutionary algorithm. | Daniel A. Ashlock, Taika von Knigslw |
| 2009 | DNA error correcting codes: No crossover. | Daniel A. Ashlock, Sheridan K. Houghten |
| 2009 | Simulation of the impact of retroviruses on genome organization of an artificial organism. | Daniel A. Ashlock, Wendy Ashlock |
| 2009 | Detecting sequence and structure homology via an integrative kernel: A case-study in recognizing enzymes. | Isye Arieshanti, Mikael Bodn, Stefan Maetschke, Fabian A. Buske |
| 2009 | Predicting protein-protein interactions using numerical associational features. | Waleed Aljandal, William H. Hsu, Jing Xia |
| 2009 | An automatic gene ontology software tool for bicluster and cluster comparisons. | Fadhl M. Al-Akwaa, Yasser M. Kadah |
| 2008 | Predicting translation initiation sites using a multi-agent architecture empowered with reinforcement learning. | Jia Zeng, Reda Alhajj |
| 2008 | Temporal and structural analysis of biological networks in combination with microarray data. | Chang Hun You, Lawrence B. Holder, Diane J. Cook |
| 2008 | Numerical representation of DNA sequences based on genetic code context and its applications in periodicity analysis of genomes. | Changchuan Yin, Stephen S.-T. Yau |
| 2008 | PCA-based linear combinations of oligonucleotide frequencies for metagenomic DNA fragment binning. | Hongwei Wu |
| 2008 | A hybrid clustering/evolutionary algorithm for RNA folding. | Kay C. Wiese, Andrew Hendriks |
| 2008 | Evolution strategy with greedy probe selection heuristics for the non-unique oligonucleotide probe selection problem. | Lili Wang, Alioune Ngom, Robin Gras, Luis Rueda |
| 2008 | SARNA-Predict-pk: Predicting RNA secondary structures including pseudoknots. | Herbert H. Tsang, Kay C. Wiese |