| 2009 | A novel LDA and PCA-based hierarchical scheme for metagenomic fragment binning. | Hao Zheng, Hongwei Wu |
| 2009 | The analysis of microarray datasets using a genetic programming. | Chun-Gui Xu, KunHong Liu, De-Shuang Huang |
| 2009 | An approach for RNA secondary structure prediction based on Bayesian network. | Tianhua Wu, Zhidong Deng, Dandan Song |
| 2009 | Steady-state analysis of genetic regulatory networks modeled by nonlinear ordinary differential equations. | Haixin Wang, Lijun Qian, Edward R. Dougherty |
| 2009 | SARNA-ensemble-predict: The effect of different dissimilarity metrics on a novel ensemble-based RNA secondary structure prediction algorithm. | Herbert H. Tsang, Kay C. Wiese |
| 2009 | A method for improving protein localization prediction from datasets with outliers. | Jiang Tian, Hong Gu, Wenqi Liu |
| 2009 | An assignment walk through 3D NMR spectrum. | Marta Szachniuk, Mariusz Popenda, Ryszard W. Adamiak, Jacek Blazewicz |
| 2009 | Fast algorithms for detecting overlapping functional modules in protein-protein interaction networks. | Peng-Gang Sun, Lin Gao |
| 2009 | A Simple Algorithm for (l, d) Motif Search1. | Dolly Sharma, Sanguthevar Rajasekaran |
| 2009 | Degenerate primer selection algorithms. | Dolly Sharma, Sudha Balla, Sanguthevar Rajasekaran, Nikoletta DiGirolamo |
| 2009 | Bioinformatics: Implementation of a proposed upgraded Smith-Waterman algorithm for local alignment. | Md. Shihabuddin Sadi, Abu Z. Mohammad Sami, Imtiaz Uddin Ahmed, Abdullahil Baki Md. Ruhunnabi, Nirmalendu Das |
| 2009 | A multi-threaded DNA tag/anti-tag library generator for multi-core platforms. | Arun Ravindran, Daniel J. Burns |
| 2009 | Goal Driven Analysis of cDNA Microarray Data. | Youlian Pan, Jitao Zou, Yi Huang, Ziying Liu, Sieu Phan, Fazel Famili |
| 2009 | An application of the metric access methods to the mass spectrometry data. | Jir Novk, David Hoksza |
| 2009 | Statistical comparison of color model-classifier pairs in hematoxylin and eosin stained histological images. | Mutlu Mete, Umit Topaloglu |
| 2009 | Predicting protein subcellular locations for Gram-negative bacteria using neural networks ensemble. | Junwei Ma, Wenqi Liu, Hong Gu |
| 2009 | Shape modeling and clustering of white matter fiber tracts using fourier descriptors. | Xuwei Liang, Qi Zhuang, Ning Cao, Jun Zhang |
| 2009 | Protein secondary structure prediction using rule induction from coverings. | Leong Lee, Jennifer L. Leopold, Ronald L. Frank, Anne M. Maglia |
| 2009 | Knee MR image segmentation combining contextual constrained neural network and level set evolution. | Haw-Chang Lan, Tsai-Rong Chang, Wen-Ching Liao, Yi-Nung Chung, Pau-Choo Chung |
| 2009 | Improved prediction of trans-membrane spans in proteins using an artificial neural network. | Julia Koehler, Ralf Mueller, Jens Meiler |
| 2009 | Data synthesis and tool development for exploring imaging genomic patterns. | Sungeun Kim, Li Shen, Andrew J. Saykin, John D. West |
| 2009 | Protein fold recognition with adaptive local hyperplane algorithm. | Vojislav Kecman, Tao Yang |
| 2009 | DDPIn - Distance and density based protein indexing. | David Hoksza |
| 2009 | Clustering incorporating shortest paths identifies relevant modules in functional interaction networks. | Jennifer Hallinan, Matthew R. Pocock, Stephen G. Addinall, David A. Lydall, Anil Wipat |
| 2009 | A framework for the application of decision trees to the analysis of SNPs data. | Linda Fiaschi, Jonathan M. Garibaldi, Natalio Krasnogor |