| 2018 | Loss-Function Learning for Digital Tissue Deconvolution. | Franziska Grtler, Stefan Solbrig, Tilo Wettig, Peter J. Oefner, Rainer Spang, Michael Altenbuchinger |
| 2018 | Statistical Inference of Peroxisome Dynamics. | Cyril Galitzine, Pierre M. Jean Beltran, Ileana M. Cristea, Olga Vitek |
| 2018 | Detecting Large Indels Using Optical Map Data. | Xian Fan, Jie Xu, Luay Nakhleh |
| 2018 | Probabilistic Count Matrix Factorization for Single Cell Expression Data Analysis. | Ghislain Durif, Laurent Modolo, Jeff E. Mold, Sophie Lambert-Lacroix, Franck Picard |
| 2018 | Multi-SpaM: A Maximum-Likelihood Approach to Phylogeny Reconstruction Using Multiple Spaced-Word Matches and Quartet Trees. | Thomas Dencker, Chris-Andr Leimeister, Michael Gerth, Christoph Bleidorn, Sagi Snir, Burkhard Morgenstern |
| 2018 | Reconstructing the History of Syntenies Through Super-Reconciliation. | Matto Delabre, Nadia El-Mabrouk, Katharina T. Huber, Manuel Lafond, Vincent Moulton, Emmanuel Noutahi, Miguel Sautie Castellanos |
| 2018 | On the Hardness of Approximating Linearization of Scaffolds Sharing Repeated Contigs. | Tom Davot, Annie Chateau, Rodolphe Giroudeau, Mathias Weller |
| 2018 | Generalizable Visualization of Mega-Scale Single-Cell Data. | Hyunghoon Cho, Bonnie Berger, Jian Peng |
| 2018 | A Cubic Algorithm for the Generalized Rank Median of Three Genomes. | Leonid Chindelevitch, Joao Meidanis |
| 2018 | Detecting Introgression in Anopheles Mosquito Genomes Using a Reconciliation-Based Approach. | Cdric Chauve, Jingxue Feng, Liangliang Wang |
| 2018 | Chromatyping: Reconstructing Nucleosome Profiles from NOMe Sequencing Data. | Shounak Chakraborty, Stefan Canzar, Tobias Marschall, Marcel H. Schulz |
| 2018 | GTED: Graph Traversal Edit Distance. | Ali Ebrahimpour Boroojeny, Akash Shrestha, Ali Sharifi-Zarchi, Suzanne Renick Gallagher, Sleyman Cenk Sahinalp, Hamidreza Chitsaz |
| 2018 | Designing RNA Secondary Structures Is Hard. | douard Bonnet, Pawel Rzazewski, Florian Sikora |
| 2018 | Positive-Unlabeled Convolutional Neural Networks for Particle Picking in Cryo-electron Micrographs. | Tristan Bepler, Andrew Morin, Alex J. Noble, Julia Brasch, Lawrence Shapiro, Bonnie Berger |
| 2018 | Efficient Algorithms to Discover Alterations with Complementary Functional Association in Cancer. | Rebecca Sarto Basso, Dorit S. Hochbaum, Fabio Vandin |
| 2018 | Linear-Time Algorithms for Some Phylogenetic Tree Completion Problems Under Robinson-Foulds Distance. | Mukul S. Bansal |
| 2018 | Long Reads Enable Accurate Estimates of Complexity of Metagenomes. | Anton Bankevich, Pavel A. Pevzner |
| 2018 | Targeted Genotyping of Variable Number Tandem Repeats with AdVNTR. | Mehrdad Bakhtiari, Sharona Shleizer-Burko, Melissa Gymrek, Vikas Bansal, Vineet Bafna |
| 2017 | Quantifying the Impact of Non-coding Variants on Transcription Factor-DNA Binding. | Jingkang Zhao, Dongshunyi Li, Jungkyun Seo, Andrew S. Allen, Raluca Gordn |
| 2017 | ASTRAL-III: Increased Scalability and Impacts of Contracting Low Support Branches. | Chao Zhang, Erfan Sayyari, Siavash Mirarab |
| 2017 | The Similarity Distribution of Paralogous Gene Pairs Created by Recurrent Alternation of Polyploidization and Fractionation. | Yue Zhang, David Sankoff |
| 2017 | ROSE: A Deep Learning Based Framework for Predicting Ribosome Stalling. | Sai Zhang, Hailin Hu, Jingtian Zhou, Xuan He, Tao Jiang, Jianyang Zeng |
| 2017 | The Copy-Number Tree Mixture Deconvolution Problem and Applications to Multi-sample Bulk Sequencing Tumor Data. | Simone Zaccaria, Mohammed El-Kebir, Gunnar W. Klau, Benjamin J. Raphael |
| 2017 | Improving Imputation Accuracy by Inferring Causal Variants in Genetic Studies. | Yue Wu, Farhad Hormozdiari, Jong Wha J. Joo, Eleazar Eskin |
| 2017 | E Pluribus Unum: United States of Single Cells. | Joshua D. Welch, Alexander J. Hartemink, Jan F. Prins |