| 2016 | Fast Bayesian Inference of Copy Number Variants Using Hidden Markov Models with Wavelet Compression. | John Wiedenhoeft, Eric Brugel, Alexander Schliep |
| 2016 | SLICER: Inferring Branched, Nonlinear Cellular Trajectories from Single Cell RNA-seq Data. | Joshua D. Welch, Ziqing Liu, Li Wang, Junjie Lu, Paul Lerou, Jeremy E. Purvis, Li Qian, Alexander J. Hartemink, Jan F. Prins |
| 2016 | Accurate Recovery of Ribosome Positions Reveals Slow Translation of Wobble-Pairing Codons in Yeast. | Hao Wang, Joel McManus, Carl Kingsford |
| 2016 | Fast Phylogenetic Biodiversity Computations Under a Non-uniform Random Distribution. | Constantinos Tsirogiannis, Brody Sandel |
| 2016 | Safe and Complete Contig Assembly Via Omnitigs. | Alexandru I. Tomescu, Paul Medvedev |
| 2016 | Revealing the Genetic Basis of Immune Traits in the Absence of Experimental Immunophenotyping. | Yael Steuerman, Irit Gat-Viks |
| 2016 | MetaFlow: Metagenomic Profiling Based on Whole-Genome Coverage Analysis with Min-Cost Flows. | Ahmed Sobih, Alexandru I. Tomescu, Veli Mkinen |
| 2016 | Distributed Gradient Descent in Bacterial Food Search. | Shashank Singh, Sabrina Rashid, Saket Navlakha, Ziv Bar-Joseph |
| 2016 | On Computing Breakpoint Distances for Genomes with Duplicate Genes. | Mingfu Shao, Bernard M. E. Moret |
| 2016 | Shall We Dense? Comparing Design Strategies for Time Series Expression Experiments. | Emre Sefer, Ziv Bar-Joseph |
| 2016 | Structural Variation Detection with Read Pair Information - An Improved Null-Hypothesis Reduces Bias. | Kristoffer Sahlin, Mattias Frnberg, Lars Arvestad |
| 2016 | Efficient Privacy-Preserving Read Mapping Using Locality Sensitive Hashing and Secure Kmer Voting. | Victoria Popic, Serafim Batzoglou |
| 2016 | Improving Bloom Filter Performance on Sequence Data Using k -mer Bloom Filters. | David Pellow, Darya Filippova, Carl Kingsford |
| 2016 | metaSPAdes: A New Versatile de novo Metagenomics Assembler. | Sergey Nurk, Dmitry Meleshko, Anton I. Korobeynikov, Pavel A. Pevzner |
| 2016 | Complexes Detection in Biological Networks via Diversified Dense Subgraphs Mining. | Xiuli Ma, Guangyu Zhou, Jingjing Wang, Jian Peng, Jiawei Han |
| 2016 | Low-Density Locality-Sensitive Hashing Boosts Metagenomic Binning. | Yunan Luo, Jianyang Zeng, Bonnie Berger, Jian Peng |
| 2016 | Allele-Specific Quantification of Structural Variations in Cancer Genomes. | Yang Li, Shiguo Zhou, David C. Schwartz, Jian Ma |
| 2016 | Assembly of Long Error-Prone Reads Using de Bruijn Graphs. | Yu Lin, Max W. Shen, Jeffrey Yuan, Mark Chaisson, Pavel A. Pevzner |
| 2016 | Multitask Matrix Completion for Learning Protein Interactions Across Diseases. | Meghana Kshirsagar, Jaime G. Carbonell, Judith Klein-Seetharaman, Keerthiram Murugesan |
| 2016 | New Genome Similarity Measures Based on Conserved Gene Adjacencies. | Luis Antonio Brasil Kowada, Daniel Doerr, Simone Dantas, Jens Stoye |
| 2016 | Tree Inference for Single-Cell Data. | Katharina Jahn, Jack Kuipers, Niko Beerenwinkel |
| 2016 | The Second Decade of the International Conference on Research in Computational Molecular Biology (RECOMB). | Farhad Hormozdiari, Fereydoun Hormozdiari, Carl Kingsford, Paul Medvedev, Fabio Vandin |
| 2016 | Joint Alignment of Multiple Protein-Protein Interaction Networks via Convex Optimization. | Somaye Hashemifar, Qixing Huang, Jinbo Xu |
| 2016 | Finding Mutated Subnetworks Associated with Survival in Cancer. | Tommy Hansen, Fabio Vandin |
| 2016 | LUTE (Local Unpruned Tuple Expansion): Accurate Continuously Flexible Protein Design with General Energy Functions and Rigid-rotamer-like Efficiency. | Mark A. Hallen, Jonathan D. Jou, Bruce Randall Donald |