| 2017 | Folding Membrane Proteins by Deep Transfer Learning. | Zhen Li, Sheng Wang, Yizhou Yu, Jinbo Xu |
| 2017 | Inference of the Human Polyadenylation Code. | Michael K. K. Leung, Andrew Delong, Brendan J. Frey |
| 2017 | Fast Heuristics for Resolving Weakly Supported Branches Using Duplication, Transfers, and Losses. | Han Lai, Maureen Stolzer, Dannie Durand |
| 2017 | Progressive Calibration and Averaging for Tandem Mass Spectrometry Statistical Confidence Estimation: Why Settle for a Single Decoy? | Uri Keich, William Stafford Noble |
| 2017 | Determining the Consistency of Resolved Triplets and Fan Triplets. | Jesper Jansson, Andrzej Lingas, Ramesh Rajaby, Wing-Kin Sung |
| 2017 | A Fast Approximate Algorithm for Mapping Long Reads to Large Reference Databases. | Chirag Jain, Alexander T. Dilthey, Sergey Koren, Srinivas Aluru, Adam M. Phillippy |
| 2017 | Ultra-Accurate Complex Disorder Prediction: Case Study of Neurodevelopmental Disorders. | Linh Huynh, Fereydoun Hormozdiari |
| 2017 | Network-Based Coverage of Mutational Profiles Reveals Cancer Genes. | Borislav H. Hristov, Mona Singh |
| 2017 | Dynamic Alignment-Free and Reference-Free Read Compression. | Guillaume Holley, Roland Wittler, Jens Stoye, Faraz Hach |
| 2017 | A Flow Procedure for the Linearization of Genome Sequence Graphs. | David Haussler, Maciej Smuga-Otto, Benedict Paten, Adam M. Novak, Sergei Nikitin, Maria Zueva, Dmitrii Miagkov |
| 2017 | A Concurrent Subtractive Assembly Approach for Identification of Disease Associated Sub-metagenomes. | Wontack Han, Mingjie Wang, Yuzhen Ye |
| 2017 | K-mer Set Memory (KSM) Motif Representation Enables Accurate Prediction of the Impact of Regulatory Variants. | Yuchun Guo, Kevin Tian, Haoyang Zeng, David K. Gifford |
| 2017 | Generation and Comparative Genomics of Synthetic Dengue Viruses. | Eli Goz, Yael Tsalenchuck, Rony Oren Benaroya, Shimshi Atar, Tahel Altman, Justin Julander, Tamir Tuller |
| 2017 | A Tractable Variant of the Single Cut or Join Distance with Duplicated Genes. | Pedro Feijo, Aniket C. Mane, Cdric Chauve |
| 2017 | Inferring Local Genealogies on Closely Related Genomes. | Ryan A. Leo Elworth, Luay Nakhleh |
| 2017 | Boosting Alignment Accuracy by Adaptive Local Realignment. | Dan F. DeBlasio, John D. Kececioglu |
| 2017 | BeWith: A Between-Within Method for Module Discovery in Cancer using Integrated Analysis of Mutual Exclusivity, Co-occurrence and Functional Interactions (Extended Abstract). | Phuong Dao, Yoo-Ah Kim, Sanna Madan, Roded Sharan, Teresa M. Przytycka |
| 2017 | On the Rank-Distance Median of 3 Permutations. | Leonid Chindelevitch, Joo Meidanis |
| 2017 | Resolving Multicopy Duplications de novo Using Polyploid Phasing. | Mark J. P. Chaisson, Sudipto Mukherjee, Sreeram Kannan, Evan E. Eichler |
| 2017 | A Unified ILP Framework for Genome Median, Halving, and Aliquoting Problems Under DCJ. | Pavel Avdeyev, Nikita Alexeev, Yongwu Rong, Max A. Alekseyev |
| 2017 | aBayesQR: A Bayesian Method for Reconstruction of Viral Populations Characterized by Low Diversity. | Soyeon Ahn, Haris Vikalo |
| 2017 | Orientation of Ordered Scaffolds. | Sergey Aganezov Jr., Max A. Alekseyev |
| 2016 | A MAD-Bayes Algorithm for State-Space Inference and Clustering with Application to Querying Large Collections of ChIP-Seq Data Sets. | Chandler Zuo, Kailei Chen, Sndz Keles |
| 2016 | Multi-track Modeling for Genome-Scale Reconstruction of 3D Chromatin Structure from Hi-C Data. | Chenchen Zou, Yuping Zhang, Zhengqing Ouyang |
| 2016 | mLDM: A New Hierarchical Bayesian Statistical Model for Sparse Microbial Association Discovery. | Yuqing Yang, Ning Chen, Ting Chen |