| 2004 | A random graph approach to NMR sequential assignment. | Chris Bailey-Kellogg, Sheetal Chainraj, Gopal Pandurangan |
| 2004 | Gene tree reconstruction and orthology analysis based on an integrated model for duplications and sequence evolution. | Lars Arvestad, Ann-Charlotte Berglund, Jens Lagergren, Bengt Sennblad |
| 2003 | Dynamic programming algorithms for haplotype block partitioning: applications to human chromosome 21 haplotype data. | Kui Zhang, Fengzhu Sun, Michael S. Waterman, Ting Chen |
| 2003 | Maximum entropy modeling of short sequence motifs with applications to RNA splicing signals. | Gene W. Yeo, Christopher B. Burge |
| 2003 | Physical network models and multi-source data integration. | Chen-Hsiang Yeang, Tommi S. Jaakkola |
| 2003 | Poetry and prose of the sequences. | Edward N. Trifonov |
| 2003 | Modeling transcription programs: inferring binding site activity and dose-response model optimization. | Amos Tanay, Ron Shamir |
| 2003 | Using a mixture of probabilistic decision trees for direct prediction of protein function. | Umar Syed, Golan Yona |
| 2003 | Invited. | Kri Stefnsson |
| 2003 | Low-level analyses of microarray data. | Terence P. Speed |
| 2003 | Combining phylogenetic and hidden Markov models in biosequence analysis. | Adam C. Siepel, David Haussler |
| 2003 | Approximation of protein structure for fast similarity measures. | Fabian Schwarzer, Itay Lotan |
| 2003 | Scoring two-species local alignments to try to statistically separate neutrally evolving from selected DNA segments. | Krishna M. Roskin, Mark Diekhans, David Haussler |
| 2003 | Transforming men into mice: the Nadeau-Taylor chromosomal breakage model revisited. | Pavel A. Pevzner, Glenn Tesler |
| 2003 | Resolution of haplotypes and haplotype frequencies from SNP genotypes of pooled samples. | Itsik Pe'er, Jacques S. Beckmann |
| 2003 | Biology and bioinformatics of halophilism. | Dieter Oesterhelt |
| 2003 | Invited. | Christiane Nsslein-Volhard |
| 2003 | A multi-expert system for the automatic detection of protein domains from sequence information. | Niranjan Nagarajan, Golan Yona |
| 2003 | Haplotype reconstruction from SNP alignment. | Lei M. Li, Jong Hyun Kim, Michael S. Waterman |
| 2003 | Efficient rule-based haplotyping algorithms for pedigree data. | Jing Li, Tao Jiang |
| 2003 | Gene selection criterion for discriminant microarray data analysis based on extreme value distributions. | Wentian Li, Ivo Grosse |
| 2003 | Invited: Prediction of protein function. | Arthur M. Lesk |
| 2003 | A complete and effective move set for simplified protein folding. | Neal Lesh, Michael Mitzenmacher, Sue Whitesides |
| 2003 | Large a polynomial-time nuclear vector replacement algorithm for automated NMR resonance assignments. | Christopher James Langmead, Anthony K. Yan, Ryan H. Lilien, Lincong Wang, Bruce Randall Donald |
| 2003 | Joint classifier and feature optimization for cancer diagnosis using gene expression data. | Balaji Krishnapuram, Lawrence Carin, Alexander J. Hartemink |