| 2003 | Large scale reconstruction of haplotypes from genotype data. | Eleazar Eskin, Eran Halperin, Richard M. Karp |
| 2003 | Whole-genome comparative annotation and regulatory motif discovery in multiple yeast species. | Manolis Kamvysselis, Nick Patterson, Bruce Birren, Bonnie Berger, Eric S. Lander |
| 2003 | Engineering a scalable placement heuristic for DNA probe arrays. | Andrew B. Kahng, Ion I. Mandoiu, Pavel A. Pevzner, Sherief Reda, Alexander Zelikovsky |
| 2003 | Accurate detection of very sparse sequence motifs. | Andreas Heger, Michael Lappe, Liisa Holm |
| 2003 | Computational analysis of the human and other mammalian genomes. | David Haussler |
| 2003 | Model-based inference of haplotype block variation. | Gideon Greenspan, Dan Geiger |
| 2003 | Finding recurrent sources in sequences. | Aristides Gionis, Heikki Mannila |
| 2003 | Combinatorial synthesis on macroscopic solid support units. | prd Furka |
| 2003 | Optimizing exact genetic linkage computations. | Mayan Fishelson, Dan Geiger |
| 2003 | An integrated probabilistic model for functional prediction of proteins. | Minghua Deng, Ting Chen, Fengzhu Sun |
| 2003 | Haplotype phase inference. | Andrew G. Clark |
| 2003 | Maximum likelihood on four taxa phylogenetic trees: analytic solutions. | Benny Chor, Amit Khetan, Sagi Snir |
| 2003 | Phylogenetically and spatially conserved word pairs associated with gene expression changes in yeasts. | Derek Y. Chiang, Alan M. Moses, Manolis Kamvysselis, Eric S. Lander, Michael B. Eisen |
| 2003 | Designing seeds for similarity search in genomic DNA. | Jeremy Buhler, Uri Keich, Yanni Sun |
| 2003 | A comparative analysis method for detecting binding sites in coding regions. | Mathieu Blanchette |
| 2003 | Towards optimally multiplexed applications of universal DNA tag systems. | Amir Ben-Dor, Tzvika Hartman, Benno Schwikowski, Roded Sharan, Zohar Yakhini |
| 2003 | Efficient exact value computation and applications to biosequence analysis. | Gill Bejerano |
| 2003 | Modeling dependencies in protein-DNA binding sites. | Yoseph Barash, Gal Elidan, Nir Friedman, Tommy Kaplan |
| 2003 | Haplotypes and informative SNP selection algorithms: don't block out information. | Vineet Bafna, Bjarni V. Halldrsson, Russell Schwartz, Andrew G. Clark, Sorin Istrail |
| 2003 | On de novo interpretation of tandem mass spectra for peptide identification. | Vineet Bafna, Nathan Edwards |
| 2003 | Efficient extraction of mapping rules of atoms from enzymatic reaction data. | Tatsuya Akutsu |
| 2002 | A Coalescent-Based Approach for Complex Disease Mapping. | Sebastian Zllner, Jonathan K. Pritchard |
| 2002 | Microarrays: how many do you need? | Alexander Zien, Juliane Fluck, Ralf Zimmer, Thomas Lengauer |
| 2002 | Parametric Bootstrap for Assessment of Goodness of Fit of Models for Block Haplotype Structure. | Maoxia Zheng, Mary Sara McPeek |
| 2002 | Dynamic Programming Algorithms for Haplotype Block Partitioning and Tag SNP Selection Using Haplotype Data or Genotype Data. | Kui Zhang, Ting Chen, Michael S. Waterman, Zhaohui S. Qin, Jun S. Liu, Fengzhu Sun |