| 2002 | Deconvolving sequence variation in mixed DNA populations. | Andy Wildenberg, Steven Skiena, Pavel Sumazin |
| 2002 | Simulating a Coalescent Process with Recombination and Ascertainment. | Ying Wang, Bruce Rannala |
| 2002 | Toward a proteome atlas for C. Elegans. | Marc Vidal |
| 2002 | Sequencing the human genome. | J. Craig Venter |
| 2002 | Haplotype Blocks in Small Populations. | E. A. Thompson, Nicola H. Chapman |
| 2002 | A dimensionality reduction approach to modeling protein flexibility. | Miguel L. Teodoro, George N. Phillips, Lydia E. Kavraki |
| 2002 | Discriminative motifs. | Saurabh Sinha |
| 2002 | An algorithm to enumerate all sorting reversals. | Adam C. Siepel |
| 2002 | Probabilistic hierarchical clustering for biological data. | Eran Segal, Daphne Koller |
| 2002 | From promoter sequence to expression: a probabilistic framework. | Eran Segal, Yoseph Barash, Itamar Simon, Nir Friedman, Daphne Koller |
| 2002 | Inferring Piecewise Ancestral History from Haploid Sequences. | Russell Schwartz, Andrew G. Clark, Sorin Istrail |
| 2002 | Biological and computational annotation of the Drosophila Genome Sequence. | Gerald M. Rubin |
| 2002 | String barcoding: uncovering optimal virus signatures. | Sam Rash, Dan Gusfield |
| 2002 | Picking alignments from (steiner) trees. | Lior Pachter, Fumei Lam |
| 2002 | Set association analysis of SNP case-control and microarray data. | Jrg Ott, Josephine Hoh |
| 2002 | Haplotype Inference and Its Application in Linkage Disequilibrium Mapping. | Tianhua Niu, Xin Lu, Hosung Kang, Zhaohui S. Qin, Jun S. Liu |
| 2002 | Revealing protein structures: a new method for mapping antibody epitopes. | Brendan Mumey, Brian W. Bailey, Edward A. Dratz |
| 2002 | Significance Of inter-species matches when evolutionary rate varies. | Jia Li, Webb Miller |
| 2002 | Combining pairwise sequence similarity and support vector machines for remote protein homology detection. | Li Liao, William Stafford Noble |
| 2002 | Phase-independent rhythmic analysis of genome-wide expression patterns. | Christopher James Langmead, Anthony K. Yan, C. Robertson McClung, Bruce Randall Donald |
| 2002 | Finding motifs in the twilight zone. | Uri Keich, Pavel A. Pevzner |
| 2002 | Lymphocyte turnover in HIV-1 infection and the role of the thymus in SIV infection. | David D. Ho |
| 2002 | Sequencing by hybridization using direct and reverse cooperating spectra. | Samuel A. Heath, Franco P. Preparata, Joel Young |
| 2002 | Handling long targets and errors in sequencing by hybridization. | Eran Halperin, Shay Halperin, Tzvika Hartman, Ron Shamir |
| 2002 | A Survey of Computational Methods for Determining Haplotypes. | Bjarni V. Halldrsson, Vineet Bafna, Nathan Edwards, Ross Lippert, Shibu Yooseph, Sorin Istrail |