| 2002 | An Overview of Combinatorial Methods for Haplotype Inference. | Dan Gusfield |
| 2002 | Haplotyping as perfect phylogeny: conceptual framework and efficient solutions. | Dan Gusfield |
| 2002 | Applied computational genomics: polymorphism prediction, data mining and genomic analysis. | Harold R. Garner |
| 2002 | Approximate matching of secondary structures. | Nadia El-Mabrouk, Mathieu Raffinot |
| 2002 | Recent duplication, evolution and assembly of the human genome. | Evan E. Eichler |
| 2002 | Tests for gene clustering. | Dannie Durand, David Sankoff |
| 2002 | A bayesian approach to transcript estimation from gene array data: the BEAM technique. | Ron O. Dror, Jonathan G. Murnick, Nicola A. Rinaldi, Voichita D. Marinescu, Ryan M. Rifkin, Richard A. Young |
| 2002 | Analysis of gene expression profiles: class discovery and leaf ordering. | Chris H. Q. Ding |
| 2002 | Inferring domain-domain interactions from protein-protein interactions. | Minghua Deng, Shipra Mehta, Fengzhu Sun, Ting Chen |
| 2002 | Designing RNA structures: natural and artificial selection. | Barry Cohen, Steven Skiena |
| 2002 | Trisomic Phase Inference. | Andrew G. Clark, Emmanouil T. Dermitzakis, Stylianos E. Antonarakis |
| 2002 | Structural alignment of large-size proteins via lagrangian relaxation. | Alberto Caprara, Giuseppe Lancia |
| 2002 | Provably sensitive Indexing strategies for biosequence similarity search. | Jeremy Buhler |
| 2002 | Microarray analysis of vertebrate embryonic neural induction. | Ali H. Brivanlou |
| 2002 | Trilogy: discovery of sequence-structure patterns across diverse proteins. | Phil Bradley, Peter S. Kim, Bonnie Berger |
| 2002 | Comparison of minisatellites. | Sverine Brard, Eric Rivals |
| 2002 | The restriction scaffold problem. | Amir Ben-Dor, Richard M. Karp, Benno Schwikowski, Ron Shamir |
| 2002 | Discovering local structure in gene expression data: the order-preserving submatrix problem. | Amir Ben-Dor, Benny Chor, Richard M. Karp, Zohar Yakhini |
| 2002 | A new approach to analyzing gene expression time series data. | Ziv Bar-Joseph, Georg K. Gerber, David K. Gifford, Tommi S. Jaakkola, Itamar Simon |
| 2002 | DNA sequence evolution with neighbor-dependent mutation. | Peter F. Arndt, Christopher B. Burge, Terence Hwa |
| 2002 | Monotony of surprise and large-scale quest for unusual words. | Alberto Apostolico, Mary Ellen Bock, Stefano Lonardi |
| 2002 | Stochastic roadmap simulation: an efficient representation and algorithm for analyzing molecular motion. | Mehmet Serkan Apaydin, Douglas L. Brutlag, Carlos Guestrin, David Hsu, Jean-Claude Latombe |
| 2002 | Using motion planning to map protein folding landscapes and analyze folding kinetics of known native structures. | Nancy M. Amato, Ken A. Dill, Guang Song |
| 2002 | Computational structural proteomics and virtual ligand screening. | Ruben Abagyan |
| 2001 | Creating the backbone for the virtual cell: cell mapping projects on the run (abstract only). | Matthias Wilm |