| 2019 | AdaFDR: A Fast, Powerful and Covariate-Adaptive Approach to Multiple Hypothesis Testing. | Martin J. Zhang, Fei Xia, James Zou |
| 2019 | Towards a Post-clustering Test for Differential Expression. | Jesse M. Zhang, Govinda M. Kamath, David N. C. Tse |
| 2019 | Comparing 3D Genome Organization in Multiple Species Using Phylo-HMRF. | Yang Yang, Yang Zhang, Bing Ren, Jesse R. Dixon, Jian Ma |
| 2019 | stance-Based Protein Folding Powered by Deep Learning. | Jinbo Xu |
| 2019 | Fast Estimation of Genetic Correlation for Biobank-Scale Data. | Yue Wu, Anna Yaschenko, Mohammadreza Hajy Heydary, Sriram Sankararaman |
| 2019 | RENET: A Deep Learning Approach for Extracting Gene-Disease Associations from Literature. | Ye Wu, Ruibang Luo, Henry C. M. Leung, Hing-Fung Ting, Tak Wah Lam |
| 2019 | Disentangled Representations of Cellular Identity. | Ziheng Wang, Grace H. T. Yeo, Richard Sherwood, David Gifford |
| 2019 | Accurate Sub-population Detection and Mapping Across Single Cell Experiments with PopCorn. | Yijie Wang, Jan Hoinka, Teresa M. Przytycka |
| 2019 | GRep: Gene Set Representation via Gaussian Embedding. | Sheng Wang, Emily R. Flynn, Russ B. Altman |
| 2019 | Distinguishing Biological from Technical Sources of Variation Using a Combination of Methylation Datasets. | Mike Thompson, Zeyuan Johnson Chen, Elior Rahmani, Eran Halperin |
| 2019 | A Sticky Multinomial Mixture Model of Strand-Coordinated Mutational Processes in Cancer. | Itay Sason, Damian Wjtowicz, Welles Robinson, Mark D. M. Leiserson, Teresa M. Przytycka, Roded Sharan |
| 2019 | A Note on Computing Interval Overlap Statistics. | Shahab Sarmashghi, Vineet Bafna |
| 2019 | De Novo Clustering of Long-Read Transcriptome Data Using a Greedy, Quality-Value Based Algorithm. | Kristoffer Sahlin, Paul Medvedev |
| 2019 | Fast Approximation of Frequent k-mers and Applications to Metagenomics. | Leonardo Pellegrina, Cinzia Pizzi, Fabio Vandin |
| 2019 | Scalable Multi-component Linear Mixed Models with Application to SNP Heritability Estimation. | Ali Pazokitoroudi, Yue Wu, Kathryn S. Burch, Kangcheng Hou, Bogdan Pasaniuc, Sriram Sankararaman |
| 2019 | OMGS: Optical Map-Based Genome Scaffolding. | Weihua Pan, Tao Jiang, Stefano Lonardi |
| 2019 | Inferring Tumor Evolution from Longitudinal Samples. | Matthew A. Myers, Gryte Satas, Benjamin J. Raphael |
| 2019 | Efficient Estimation and Applications of Cross-Validated Genetic Predictions. | Joel Mefford, Danny S. Park, Zhili Zheng, Arthur Ko, Mika Ala-Korpela, Markku Laakso, Paivi Pajukanta, Jian Yang, John S. Witte, Noah Zaitlen |
| 2019 | Mitigating Data Scarcity in Protein Binding Prediction Using Meta-Learning. | Yunan Luo, Jianzhu Ma, Xiaoming Zhao, Yufeng Su, Yang Liu, Trey Ideker, Jian Peng |
| 2019 | Tumor Copy Number Deconvolution Integrating Bulk and Single-Cell Sequencing Data. | Haoyun Lei, Bochuan Lyu, E. Michael Gertz, Alejandro A. Schffer, Xulian Shi, Kui Wu, Guibo Li, Liqin Xu, Yong Hou, Michael Dean, Russell Schwartz |
| 2019 | Efficient Construction of a Complete Index for Pan-Genomics Read Alignment. | Alan Kuhnle, Taher Mun, Christina Boucher, Travis Gagie, Ben Langmead, Giovanni Manzini |
| 2019 | Sketching Algorithms for Genomic Data Analysis and Querying in a Secure Enclave. | Can Kockan, Kaiyuan Zhu, Natnatee Dokmai, Nikolai Karpov, M. Oguzhan Klekci, David P. Woodruff, Sleyman Cenk Sahinalp |
| 2019 | How Many Subpopulations Is Too Many? Exponential Lower Bounds for Inferring Population Histories. | Younhun Kim, Frederic Koehler, Ankur Moitra, Elchanan Mossel, Govind Ramnarayan |
| 2019 | Sparse Binary Relation Representations for Genome Graph Annotation. | Mikhail Karasikov, Harun Mustafa, Amir Joudaki, Sara Javadzadeh-No, Gunnar Rtsch, Andr Kahles |
| 2019 | Minimization-Aware Recursive K^* K ∗ ( MARK^* MARK ∗ ): A Novel, Provable Algorithm that Accelerates Ensemble-Based Protein Design and Provably Approximates the Energy Landscape. | Jonathan D. Jou, Graham T. Holt, Anna U. Lowegard, Bruce Randall Donald |